gene PH01003970G0120
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01003970:76420 - 83696(- stand)   Name
Alternate name Locus tag PH01003970G0120
Length of gene 7277  bp Length of CDS 1341  bp
Product information
Feature type
CDS
Product name
NLI interacting factor-like phosphatase
Alternate name
Molecular weight
(predicted)
49871.07812  kDa
Isoeletric point
(predicted)
4.29838943481445
Length
446  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_127075 5
Please click OG5_127075 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os01g47540.1 NLI interacting factor-like phosphatase, putative, expressed 0
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
  2. Domain
1 50 100 150 200 250 300 350 400 446
Detailed signature matches
    1. SSF56784 (HAD-like)
    1. SM00577 (CPDc)
    2. PS50969 (FCP1)
    3. PF03031 (NIF)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding
GO:0016791 phosphatase activity

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 233801 283 430 4.37E-58 TIGR02251 HIF-SF_euk cl17354 -
superfamily 247908 283 430 4.37E-58 cl17354 NIF superfamily - -
non-specific 217328 283 432 2.21E-46 pfam03031 NIF cl17354 -
non-specific 214729 283 412 3.21E-43 smart00577 CPDc cl17354 -
multi-dom 227517 283 442 8.87E-28 COG5190 FCP1 - N
multi-dom 131304 308 407 5.00E-11 TIGR02250 FCP1_euk - N
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01003970G0120 gene.
CGCTCGACACCAGCCGTATGTGTGTTTGGTGCAGCCGCAGCGCGAGGTGGAGGCGGAGATGCGGCGGCTGCGGCTGGAGCTGAAGTAGACGATGGACATGTACAACGCGGCGTGCAAGGAGGCCATCAACGCGAAGCAGTGCGCCAAGGAGATGCAGCTAATGAAGCTGGAGGAGGCGTGGTGGCTGGAGGAGGCCCGCCAGGTAGAGGAGGCGGCGCTGGCGTAGGTCGAGATGGAGAAGGCCAAGTGCCAGGCCGCCATGGAGGGGAGCTTAGTGCGGCAGCCCAGGGCGATGCTCGCAGCTCGGGGCGGTGCTCGGAGCTCAGGGCGAACAACGGCGGCGAGCTGCGCACGGAGTAAAGAGGGAGCCCGAGGGAAGAGGACGGCACTCGGCGACGGATCTGGTAGCAGGGGCGATGGAGGTGTGGGCCCTCCTGCCTCCCAACTCCTCCCTCGTCTCCCCGTCGCCGCCGCCGCCCCTCGCCTTCATGTCACCGCGCCATCACCTCCATCCAAGAAGGGCGGAGAGGGAGAGGATGGTGAAGGCACCTGGGGAGGCCCAGCACCAGCACCAGCCCTCTGCGACCCCTCCGCCGCCGCCATCGCCGAGGCCCTTCCCCACTCCCCTGCTCCCACTCCCCCGCCTCCACTCCTCACCTGGACTGACCCCTCGCCCGCGAAGGAGCAGCGCTGGATCGGCGACCGGGAGCCAGGAAGGTGCAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGCGGCNNNNNNNNNNNGCGAATGTAGTTATACATGTATAGTATGATTGTACGATGTATGGATCAAATAAAGAAAGACAGACAGGGAATATCACTTAATAGTNNNNNNNNNNNGAAGGGCATCAGTACGCCACGTCAACGAAAGATGTACACGTGGATGCCACGTGAACGCCACGTCAGCTAAAACCAGGGTTGTTTAGGATAAAAGGGTTATTTAATCTGAT
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CDS sequence
ATGCCAGCATTGAGGATGAAGAGGAAATTTGATGATGATGGTTTTGGGAATGAGTTTGACACCAACTCCAAGTCCATGAAATCTATGAAAATCTCGCATTTTCAAATCGGGGAGTTAGAGCAGTCACCTGTGGTGAATTATGAGCCTGATCTGACAACTCATCTAGCTGGCCAGGATATTAGGATCATGGAAGCTTCTGGCTTTCATGATATGCTTGGAGAAACATCTATTGCTCTGCTCAAGGATTTAATATCTGAAGTGGCGGTTTCACCAAGTTTGGAGACTGATTCCTTATCTAATTATGACGACAGCGAATCTCAGTTTAATGTAGTAAATTATGTTGACAAAGGCTTTGCAGATGAAGATGTAAATTATGCAGCACATAGTCTTTGTGCTGTTAATGATCATGAAGAAAGCTGGGGCTCAAATCAGGGTTGCAGCTTATTGGACATTTATAATCCTGATGATGCCTTCCCTTTCCTATTTGATGCTCCAACTGATCTCCTGGCTAGTTACACTGCATTATGTGATGAATTTGTACCCATTGATGCATTGATAAACATCAGTTGCAGATGTGGAGTATTCCCACTTACTGAGAGCACTGCGGAGGCCAGTATTGGTAATGAGCCATGCTCATCTGTGGGGGATATGTGCTTTAGTAACTCTGAGGGGGATATGTGCTTAAGTAACTCTGAGGTGTTAGAGTGGCTTAATCCACATCTGGCTGAGGAGGATTTGCCTAACCTTATTGATTTTACCGAGTTGAGTTCAAATGCTGCTTGTGTATCTAAAGAGCAAGGGACCAGGAAGGTCACTCTTGTGCTTGATTTGGATGAAACCCTTGTTCATTCAACTATGGAGCACTGTGATGATGCTGATTTTACTTTCCCAGTGTTCTTTGATATGAAAGAACATGTGGTATATGTGAGAAAGAGACCACATCTCCACACGTTCCTCCAGAAGATGGCCGAGATCTTTGAGATTGTTATATTCACAGCCAGCCAAAGCGTTTATGCAGATCAGCTGCTTGACATGCTGGATCCAGAGAAAAAATTCTTCTCCAAGCGTTTTTTCCGTGAGTCATGCGTATTTACGGACAGTGGCTACACAAAGGATCTGACTGTTGTTGGAGTTGACCTCACAAGGGTTGCCATAATTGACAACACTCCGCAGGTTTTTCAGTTGCAAGTGAATAATGGTATACCAATAGAGAGTTGGTTTAATGACCCCTCGGACGAGGCGTTACCTCAGCTGATTCCTTTCCTGGAGACCCTTGCTGTTGCGGATGATGTCCGACCCATCATTGCCAAGAAGTTTGGCAACAAAAAGGATAATTGCTGA
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Downstream 1000 bp region from PH01003970G0120 gene.
GAAAAGGAACAGAGCATTGAGGCTCAACATATAAAACTATACAAAGAAACAAAAGCATAATTATTTAATGAATACATGATAAGATTTAATACTGCTTTCTGTATGAATTAAATCTTCTATCTATCCCTATTCAGTACAACAGACATGGCCANNNNNNNNNNGATTTTTCCAACCTAGTGCATGGACAGTGTCAGTATCAGATTCATCAGGGAGCACATCACTGGCCCAAGCATCACTGACATGGCCGTCCACTGTGAAGTATAAGTAAAGATCTATTGCTGTGCCACTACACAGTGTTACTGGGTCTTGGATATGCAGGTCAGCTGGTTCATACTCAAGTAAAAGCAACCATGCAAAGTTGTCTACTCGTGAACTAATGTTGTGTACTTGTGTGCCACATCCACTTCTCCTTACTTACCCTCCTAGTCCATAGAAACAAAGTAATGCCAATAATTAGTGCACAACAAACAGGAGTAAAATATCCTACACGTCCAACTTTTGTGGATCACAATTTCCAGTGTAACTCAACAAGACTGCAACCAAGAATCTAAACAACCAATGCAAATCTACTACATCACAGTTCACTAACATCGTGAATCTTCCCACACCTTATACCCTCAACCTTGTGCAACACTGCTGGTGCCAATTCTGAACCTGGGTCAAACTCGTGAAGGAATATTACTATAACCTATACCTCAAGAGGCCCGCCTTTGAGCAAAGGCCTTGCTTTCTCAGACAGTTTCCACTCTTCAATCACATATTTCTGCAAGTGCTCTTTTGCTTACACAAAAGCAGTATCCTTTTACCGGCAAAGCAGGGGCAACCTTAAGGTTGGTTAAATTATTATAGTTTATTTCTTCAATTGCATAAGCAATCGCACAAACCTAGACGTATTAGACATGGTTTTTAATTACTTTGTGCTGTGCAACATCAAAGGGTAGCTAAAATGTTTCACGTAAGCAACAAGCTAGAGTAGGAGATTTGAATACATAATCATTTGT
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Scaffold PH01003970 Download
Protein sequence
Protein sequence
MPALRMKRKFDDDGFGNEFDTNSKSMKSMKISHFQIGELEQSPVVNYEPDLTTHLAGQDIRIMEASGFHDMLGETSIALLKDLISEVAVSPSLETDSLSNYDDSESQFNVVNYVDKGFADEDVNYAAHSLCAVNDHEESWGSNQGCSLLDIYNPDDAFPFLFDAPTDLLASYTALCDEFVPIDALINISCRCGVFPLTESTAEASIGNEPCSSVGDMCFSNSEGDMCLSNSEVLEWLNPHLAEEDLPNLIDFTELSSNAACVSKEQGTRKVTLVLDLDETLVHSTMEHCDDADFTFPVFFDMKEHVVYVRKRPHLHTFLQKMAEIFEIVIFTASQSVYADQLLDMLDPEKKFFSKRFFRESCVFTDSGYTKDLTVVGVDLTRVAIIDNTPQVFQLQVNNGIPIESWFNDPSDEALPQLIPFLETLAVADDVRPIIAKKFGNKKDNC
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