gene PH01001952G0190
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01001952:161944 - 165600(- stand)   Name
Alternate name Locus tag PH01001952G0190
Length of gene 3657  bp Length of CDS 600  bp
Product information
Feature type
CDS
Product name
OsMADS1 - MADS-box family gene with MIKCc type-box
Alternate name
Molecular weight
(predicted)
23138.8379199999  kDa
Isoeletric point
(predicted)
5.64261245727539
Length
199  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_205220 4
Please click OG5_205220 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT3G02310.1
K-box region and MADS-box transcription factor family protein
MADS-box protein, binds K domain of AG in vivo
SEPALLATA 2 (SEP2); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 gr
6E-33
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os03g11614.1 OsMADS1 - MADS-box family gene with MIKCc type-box, expressed 2E-79
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 20 40 60 80 100 120 140 160 180 199
Detailed signature matches
    1. PF01486 (K-box)
    2. PS51297 (K_BOX)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR11945 (MADS BOX...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component

GO:0005634 nucleus

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 216525 28 122 5.34E-24 pfam01486 K-box cl03234 -
superfamily 216525 28 122 5.34E-24 cl03234 K-box superfamily - -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01001952G0190 gene.
GGCTAAGATTTTCACATAAGAATGTGTATCATGTACTCTTTCTTCAAATTTTTTCCACTTGATTTTTATAAAGTTTTGACGAGATATAAACATGTGAGGATGGGTGCCCAAAGATGAATGTTAAGAAACCATGAGCTTGGTCCAGCAGCCGGTCCATAGGTGGACGACCCATCCAAAACCCTAGCAGAGGCTGTAGCATATAAATAGGGGGTACTAATCATTGTAAAAAATTGATCGCTTGATGAATGAATAAAAGGGAAGCAAGAAGTCTCTTATATCTCTGTATACAATTTACTATTTTGTGCTTGTGTTTTTGTATTATTCTAAGTGATTCTACGTTTGTATATAAGATGATCGTTCGAATTGAACTTGTTAGCGACCATTCCTCATGTGACAGAGTTGCGACTTGCGAGAGCGCGCGTCGCCACGGGCGCTAACCCGCGCGGCAGAAGCCACAAACCAGTGGAGTTCTGGCACCGTGCGGCTGTGCCGACCTGCCGCGTGCGACGCGACACCGCACGGTGCGCTACTAGCGTACTGCCGAACTCACCGGCGAATGCTGCCGTTGCGGTGCTGACGGGCCGCGCTGCTGCCGTCGGCCTGTCAGGTTGGCACGGTGCTCTGCCGCTGCGGCACTCGGACGAGCTTCCGCTACCGCGCGCGGCGGATACCGCCAGCCGTTGCTGTCCCGATCGATCTCTGAAGTCTGAACCCCAGAAACGAAGAGCATGTTGGCCCCACAACAATTAACAAAGCATTAACGATTCATCCAAGAACATAGCAATAAGCCATCAGCATATCCAAGATTACTTTTTGATAGCATGGTGCTACTCGTTTACCACACAAATATAATCAAGTGTCAACGTACGTTTTACACATGCGATCTTGAAATAATCATTACTCGATCGGTCCAAATTAACTACGGAACGCAACAGCCACATGGTATCCGTGGATCAATGACGATACAATACGTACGTACTCGGCTCGAATTATTCCCCTGT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGTACAAAACACTCGAGAGATACCGCACCTGCAACTACAGCTCACTGGAAGCAAATGCTCCGGTGGAAAATGAAATTAATTACCAGGAATATTTGAAGCTGAAGACCAGAGTTGAGTTTCTTCAAACCACACAAAGTTTTTATCAGCATATAACATACCAGCACTCGTTCACATCTCGTAGAAATATTCTTGGTGAGGATCTGGGTCCACTTTGCATGAAGGAGCTTGAGCAGCTTGATAACAAAATAGAGACATCCCTCAAACAAATCCGGTCAAGAAAGAATCAGGTATTACTTGATCAGCTATTTGATCTGAAAAGTAAGGAACAAGAATTGCAGGGTCTTAACAAAGATTTGAGGAAGAAGTGCCAGCTGCAAGAAACCAGTGGAGAGAATGCACTACATATTTCCTGGCAAGATGGAGGGCAGAGTAGCACTAGTGGGCATGCTATTGAACCTTATCAGGGACTCATTCAACACCCAGAAAATGATTCTTCCATGCAAATCGGGTATCAACAGATCTATATGGACCAGCTGAACAACGAAGACATGGCTGCTCAGCACCCTAATGGACACACTGGATATGCAGGTTGGATATGA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01001952G0190 gene.
ATACGGTTCTTTGGTAATAAAGGGTGTATATATATATATACTTCTTAAGCTACCACTTAAACGCATGTACTATACTTCTTTATCATTTTCAGTATACTTAAATACTAATTATAAGATACTCCAATGCGACTTAATTGAAAAAATTTCATTGGAGCCCTTTGTTTTTTTGCTATATACCTTTTTTCGTATATAAAAGAAGTATATACACAAATTTTGCTATAAAAAGTGAAATTTAATGAAATTTTCATGGAACTCAATTTGGGGTATCTTATAATCATTATTAGAGTATGCTCAAATAGATAAAGAAGTATCGTCATACGTACTCCCACCTCTCATATACCACTTAAATCGTATGACTATACCTCTTTATCTATTTGAGCATACTCTAATAATGATTATAAGATACCCCAAAGTGAGTTCTATGAAAAATTTCATAAAAGTCCACTTTCTACAGCAAAATTTGTGTATATATTTCTTTTATATATGAAAAAGGGTATATAGCAAAAATAAAGGGCTCCAATGGAAAAAAAATTTCAACCAATTCACATTGGAGTATCTTATAATTGTTATTTAAGTATACTGAAAGTGATAAAGAGGTATAATATGTTGGTTTAAGTGGTATATTGGAAGTGGGAGTACATACTCCTCCCAGGAGTGTGTATTTATCGTCCTATTGAGATTTATCCCAAGTTTTGCACTCAGTCGTTTTGCTATGAGCAAAGCTATTTTGCACTTTTATCAAGGGTGTTTTTCTCTTATTTCTAGGGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATGAAAAATACTATTTACTCTCAGGTCTAGTTACTCCCTCTCCATCCACCCTTTAACCCTTTAATCCTCAATGAGATTCGTGCACCTTTCCGAGCCTAACAGGCCTAAAAATCACAAATAGGAGGGCGT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01001952 Download
Protein sequence
Protein sequence
MYKTLERYRTCNYSSLEANAPVENEINYQEYLKLKTRVEFLQTTQSFYQHITYQHSFTSRRNILGEDLGPLCMKELEQLDNKIETSLKQIRSRKNQVLLDQLFDLKSKEQELQGLNKDLRKKCQLQETSGENALHISWQDGGQSSTSGHAIEPYQGLIQHPENDSSMQIGYQQIYMDQLNNEDMAAQHPNGHTGYAGWI
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BLAST search against this genome or other genomes in database  
 

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