gene PH01001857G0210
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01001857:129250 - 142221(+ stand)   Name
Alternate name Locus tag PH01001857G0210
Length of gene 12972  bp Length of CDS 4314  bp
Product information
Feature type
CDS
Product name
heat shock protein DnaJ
Alternate name
Molecular weight
(predicted)
159053.08492  kDa
Isoeletric point
(predicted)
5.75123977661132
Length
1437  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_129678 4
Please click OG5_129678 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT2G26890.1
DNAJ heat shock N-terminal domain-containing protein
GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplas
GRAVITROPISM DEFECTIVE 2 (GRV2); FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: in 10 processes; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular cha
0
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os10g42439.1 heat shock protein DnaJ, putative, expressed 0
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 200 400 600 800 1000 1200 1437
Detailed signature matches
    1. PF14237 (DUF4339)
    1. PF00226 (DnaJ)
    2. PS50076 (DNAJ_2)
    3. SM00271 (DnaJ)
    4. SSF46565 (Chaperone...)
    1. SSF48371 (ARM repeat)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR24078 (DNAJ HOM...)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005488 binding

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 99751 1097 1135 1.79E-11 cd06257 DnaJ cl02542 -
superfamily 243077 1097 1135 1.79E-11 cl02542 DnaJ superfamily - -
non-specific 215804 1097 1135 2.15E-11 pfam00226 DnaJ cl02542 C
non-specific 197617 1097 1138 2.71E-11 smart00271 DnaJ cl02542 -
specific 206405 730 775 3.39E-08 pfam14237 DUF4339 cl16735 -
superfamily 206405 730 775 3.39E-08 cl16735 DUF4339 superfamily - -
multi-dom 236757 1098 1135 2.28E-10 PRK10767 PRK10767 - C
multi-dom 223560 1098 1135 6.66E-10 COG0484 DnaJ - C
multi-dom 233829 1100 1135 6.97E-10 TIGR02349 DnaJ_bact - C
multi-dom 237657 1100 1135 3.73E-08 PRK14281 PRK14281 - C
multi-dom 237664 1101 1152 9.81E-08 PRK14294 PRK14294 - C
multi-dom 237653 1098 1151 4.18E-07 PRK14276 PRK14276 - C
multi-dom 184611 1101 1135 4.29E-07 PRK14297 PRK14297 - C
multi-dom 184599 1098 1135 5.11E-07 PRK14277 PRK14277 - C
multi-dom 237661 1098 1135 7.30E-07 PRK14291 PRK14291 - C
multi-dom 237658 1102 1135 9.14E-07 PRK14284 PRK14284 - C
multi-dom 237663 1098 1135 1.17E-06 PRK14293 PRK14293 - C
multi-dom 237668 1098 1135 1.62E-06 PRK14301 PRK14301 - C
multi-dom 240236 1071 1135 3.01E-06 PTZ00037 PTZ00037 - C
multi-dom 237667 1097 1155 3.48E-06 PRK14299 PRK14299 - C
multi-dom 237660 1102 1135 4.07E-06 PRK14289 PRK14289 - C
multi-dom 184612 1102 1134 7.11E-06 PRK14298 PRK14298 - C
multi-dom 184604 1098 1134 7.68E-06 PRK14283 PRK14283 - C
multi-dom 225124 1098 1137 7.79E-06 COG2214 CbpA - C
multi-dom 172774 1100 1135 1.19E-05 PRK14286 PRK14286 - C
multi-dom 184603 1098 1135 1.92E-05 PRK14282 PRK14282 - C
multi-dom 237656 1102 1135 1.97E-05 PRK14280 PRK14280 - C
multi-dom 237654 1101 1135 2.51E-05 PRK14278 PRK14278 - C
multi-dom 172776 1100 1134 2.92E-05 PRK14288 PRK14288 - C
multi-dom 237662 1100 1134 4.16E-05 PRK14292 PRK14292 - C
multi-dom 172778 1098 1135 4.55E-05 PRK14290 PRK14290 - C
multi-dom 237659 1097 1137 0.0001855 PRK14287 PRK14287 - C
multi-dom 172773 1101 1135 0.000298699 PRK14285 PRK14285 - C
multi-dom 237666 1101 1133 0.000358454 PRK14296 PRK14296 - C
multi-dom 237655 1100 1135 0.00046464 PRK14279 PRK14279 - C
multi-dom 234368 1100 1135 0.00152773 TIGR03835 termin_org_DnaJ - C
multi-dom 227694 1101 1135 0.0023345 COG5407 SEC63 - C
multi-dom 182347 1100 1135 0.00344744 PRK10266 PRK10266 - C
multi-dom 211601 1099 1135 0.00459796 TIGR00714 hscB - C
multi-dom 236512 1076 1136 0.00612036 PRK09430 djlA - N
multi-dom 237665 1101 1135 0.00765616 PRK14295 PRK14295 - C
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific HSP70 interaction site H1116,P1117,D1118,R1124,F1127,V1128,Q1131,K1132 8 8 99751
 
DNA sequence
Upstream 1000 bp region from PH01001857G0210 gene.
TTATTGTTGGCTTGTAAGCATTTCTTGTAATAAACTCTGTTGATTAACCTTTCTTATAATAAACTCTATTGATTATTAATATAATTGTGTGTTTTATGGATGTTACCATATCTGTTTACTGTGTGAACTAGTTACTGATCATGGGACTAGTTTAGAAATGCACAGAGGATTTGGGGGTGTTACTCCCGGGTCCGACACGAGCCCTACTAACAAGCTTTTTTTTTCCACCACTACTAAGGATGAGATGTTTCATGAGAGAACGAAGCACATTGGCATCATATATCATTATATTTGAGGTGTCATTGCTCAAGATGATATTAAAGTCAAGAAGATGAGTACTCATGGTAATCCAGCTGATCTGATAACAAGGCTAATTCATACCGCTAAGTTTGAGCTTTGTTCTCAAAAACTTAGTTGGTATCATTCAGTAGTTCTATGGACGTTCGACACAGAAGGTGTTCATGCTAATATGTTTCGAGAAGATCACGTTTTGTTTTGGCTACATGGGGTATACGTCTCAAGGTAGAGATTGTTAAGTTTTAGTGTGATACGAATTGAGTTTTAGTGTGATACGAATTTAGTTTTATACTCCAACTCATAGTTCTATTCCTACACGGAGTCTTTCATGTACCACTACAAATATATCACTAAGAGCTTCATTGTAAACATCTCATCATGTAGTGATATTGCCTTCGTGCGCCTATATTTTTTTCTCGAAAGGGTTTTCCACGTTGCTGTAGTCCACAGGGAAGAGCAAGATCTTCATTGTAAATATCTTCTCATATAGCAGATATTACATTCGTGCGCCTGTGGTTTTTTTCGAAAGGATTTTCTACGTGAATTTGATGTTTTTCGTTCCTATTTTTTCATGCATTATTTACAACAGTGCTCCCCCGCGGACAATTCTGAATCTCCCGATCTATTGTCGATGAACGAATCACGACAGAGAGTAAGAAGAGAGAATTTTTGGGAACTGATTACCGCATCTGAATCTGAATGTG
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CDS sequence
ATGGATTCTCCTGCTATTGTGCTCTTGGGAGAAAGCTATGGGAAGAGGACTGCTGAAGGTGGAGGGTTTGTGCTATGCCCCCTTTATGGAAGGAAGTCAAAAGCATTTATGGCTGCTTCAGGCAGTACAAACACTGTGATTATATCTTATTTGACAAAAACTGCCAAGTCAACGATTGGATTATCACTATCTGTGGACAATTCACAATCAATGACAGCTGCTGACTTTATAGCAAAGAGAGCCAATGAGGCAGTTGGAGCTGCTGAAACTCGACATGGAGAATGGTCAGTAACAAGATTACGTCCCGCTGCACATGGCACTGCTAGCGTTGAGAGCTTAAGTTTGGGCATTGGACCAAGGGGAGGACTTGGAGAACAGGGTGATTCTGTTTCTCGGCAGCTTGTTCTTACAAACACTTCACTTGTCGAAAGACGCCCCGAGAATTACGAGGCTATCATTGTCCGACCTCTCTCAGCGGTAAATGCCCTTGTCCGATTTGCAGAAGAGCCGCAGATGTTTGCATTTGAATTCAATGATGGCTGTCCGATTCATCTACACCAAAACAAGTTGTATGAAGAGTACAGTTTCTTCAAATGTATCACTTCTTTGACCTTTCTCAGTTTTGCACCACTTGAGGTCAACATGGAATTGGTATACTGCTTTGCAGAGCTACACCAAAACAAGTTGTATGAAGAGTACAGTTTCTTCAAATATGCAATAGCAGCAGAGTCCATGCGTGACGCTGCCTTGAAGGATGGTGCGCTTCTGAGGCATTTGCTAAACTCTTTTTTCTTCCCTGCTGGTGAGCGGCGTGATGTTAGTCGGCAGCTTGTTGCTCTTTGGGCTGATTCCTATCAACCTGCACTGGATTTGCTGTCAAGAATACTTCCTCCTGGACTTGTTGCTTATCTTCATACACGCTCAGATGAAGATTCTCAGAACCAGTGTGACGAAGTACCGTTGAGCAGAAGGCAGAAACAGATACTTCAGCAGAGGAGGGCCCGTGGTGGTAAGAGTACAGCAACACCAGAACAAGGTATGCCCCCCAATAGTGTTGATGATGGGGATTTCTTCAGGCACACCGGTGTGGGGCCTTATGGAGGAGCAGATGTCCGTCAGACACATGCCAGTCAGTACCCAACTGCCCAGACCCCTTCTCCTGGTATAGGTATTGATCCTTCTCATGCAGTACCACATGGTGCTGTACCTGAGGCGGCTTATGAAAATAATCATCAAACTGGAGCACCACAGCTGGATTCACATGCTTATTCCGTGGACTCCAATGCCAATGGCAACCTTGTTAGCTCCTCACATTCAGATTTCTCAGTCCCTGCACAGGTTGTGGTGGAAAACACTCCTGTGGGATCTGGCAGGCTACTGTGCAATTGGTATGGATTTTGGAGAGCGTTCAGTCTAGATCACAATAGAGCAGATTTGATCTGGAACGAACGCACGAGACAAGAATTAAGGGAAGCATTGCAAGCTGAAGTTCATAACCTTGATGTTGAGAAAGAACGAACCGATGACATTGTCCCTGGAAATTCGGTCAGTGAGGATGCTGGCGGTAGTGACACTTTACCACGAATGTCATGGAATTATGCTGAATTTTCAGTTAGCTACCCTAGCTTGTCCAAAGAAGTCTGTGTGGGGCAATACTATTTGCGGTTGCTGCTTGAAAGTGGAAGCAACTACCAAGCACAGGATTTTCCACTGCGTGATCCTGTTGCCTTTTTTAGAGCTCTATACCATCGTTTCTTGTGTGATGGAGATATTGGTCTTACTGTGGATGGTGCAGTTCCGGATGAACTGGGTTCATCTGATGATTGGTGTGACATGGGAAGATTGGATGGCTTTGGCGGAGGTGGAGGTTCCTCTGTAAGAGAACTTTGTTCAAGGGCAATGTCTATAGTTTATGAACAACATTACAAAGTTATCGGGCCTTTTGATGGCACGTCACATATTACTGTTCTCTTAGACAGAACAGATGATCGGGCATTAAGACATCGTTTGCTACTTCTGTTAAAGGCCCTGATGAATGACCTTTCAAATGTTGAAGCGTGTGTTTTGGTTGGAGGCTGTGTTTTAGCTGTCGATTTGCTAACTGTTGCTCATGAAGCATCTGAGCGGACAGCTATTCCTTTGCAATCTAACCTCATCGCGGCAACCGCATTTATGGAGCCTCCGAAAGAGTGGATGTATATTGACAAAGATGGTGCACAAGTGGGTCCACATGAAAAAGATGCTATCAGAAGGCTGTGGTCAAAGAAGTCAATTGATTGGACAACCAAATGTTGGGCTTCCGGTATGTCTGACTGGAAAAGATTACGTGACATCCGGGAGCTGCGTTGGGCACTTTCTGTTAGAGTACCTGTTCTTACTCCTACTCAGATTGGAGACGCTGCATTGTCTATATTGCGTAGTATGGCATCTGCACATTCTGATCTTGACGATGCAGGCGAGATAGTGACCCCAACTCCTAGGGTGAAACGTATATTGTCAAGTCCAAGATGCCTTCCTCATGTTGCTCAGGCTATGCTTACTGGGGAACCAAGCATTGTTGAAGCAGCTGCCTTCTTGCTTAAGGCTATTGTCACAAGAAACCCCAAAGCTATGATTCGACTATATAGTACTGGTGCCTTTTACTTTGCATTGGCATACCCTGGTTCAAATCTCTTAACAATTGCACAACTCTTTTCGGCCACACATACTCATCAAGCTTTTCATGGCGGTGAAGAGGCAGCAGTATCTTCGTCATTGCCTTTGGCAAAGCGTAGTGTACTAGGTGGACTGCTCCCAGAATCATTGTTGTATGTCTTAGAACGCAGTGGTCCTTCAGCTTTTGCTGCTGCCATGGTGTCTGATTCTGACACACCAGAAATTATATGGACCCACAAGATGAGGGCAGAAAATCTTATTCGCCAGGTTCTGCAGCATCTCGGCGATTTTCCTCAGAAATTGGCTCAACATTGCCATTCATTGTATGATTATGCTCCTATGCCACCTGTGACCTACCCGAATCTGAAAGATGAGATGTGGTGCCATCGTTACTACCTTCGGAACCTATGTGATGAGATTAGGTTTCCTAACTGGCCTATTGTTGAACACGTAGAGTTTTTGCAGTCGTTATTGGCAATGTGGCGTGAAGAGTTAACTCGTCGTCCAATGGATTTGTCTGAAGAAGAAGCCTGCAAGATACTGGAGATTTCTCTTGATGATCTTGTGCTTGGTGAGAATGGCGGTAGCAGGCAGTCATCCGAGTTAAGTTCAGCCAATTTTGCAAACAATATTGAAAACATTGACGAAGAGAAGCTTAAGCGGCAATACCGGAAGCTGGCCATAAAATACCATCCAGACAAGAACCCTGAGGGAAGAGAAAAGTTTGTTGCTGTGCAGAAGGCGTACGAGCGAATGCAGTGGATCTATTATCTATACACGCAGGCAAGTATGCAGGGATTGCAGGGACCACAAGTCTGGAGGCTGCTACTCTTACTCAAGGCACAGTGCATATTGTACAAGAGATATGGACATGTCTTGGAACCATTCAAATATGCTGGCTATCCTATGTTGCTAAATGCAGTTACTGTAGATAAGGATGACAGCAATTTTCTTTCATCTGATAGAGCCCCTCTTTTGATGTCCGCTTCAGAGCTAATTTGGCTGACATGTGCATCATCTTCATTAAATGGAGAAGAGCTTATACGAGACAGTGGTATCCCATTGCTGGCAACACTTCTCTCACGTTGCATGTGCATCGTTCAGCCTACAACTCCGGCAAATGAACCAGCGGCAAGAATAGTCACCAACATAATGCACACATTCTCAGTTCTCAGCCAGTTTGAGTCTGGAAGAGTTGAGATTCTTAAATTTGGTGGTCTTGTTGAGGACATTGTGCACTGCACAGAACTGGAATTTGTTCCCTCCGCTGTGGATGCTGCTCTGCAGACAGCCGCTAATGTTTCAGTGTCATCTAAATTGCAAAATGCTCTTCTAGCGGCTGGCTTTTTATGGTATGTGTTGCCCCTACTTCTTCAATACGATTCGACAGCAGAAGAGAATGAGGCAAATGAAGTACATGGTATTGGGGCAAGGGTACAGATCGCTAAAAATCTGCATGCTGTACGTGCTACTCAGGCTTTGTCAAGGCTCTGTGGTCTTGGTGGTGGCGGAATATCAAGCCCATCTAACCAGCCTGCTTTCAATACACTAAGAGCACTTCTTACTCCCAAACTTGCTGATATGCTGAGAAACCACCCACCCAAAGAGCTATTATCAAATCTAAAATCAAACTTGGAGTCACCAGAGATGGAAAGATGA
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Downstream 1000 bp region from PH01001857G0210 gene.
ATAAACGCACCCATGTTGGTATCTCAAAGATGTCCAACTAAGATTACCCAACCTATGGTGTCCAAGCGTACATGTCAACATATCAATCACAAGTATTCAAGGAGTCATATTGCCGAGTAGACATTTAGCTATTTCCCAAACCATTTTTATATAATTAGTCATGCATGTTGGTAGAAAACAATGTAATTTTGCAAACTGGGTACGACATGATCAAAGGTCTACGACTTGCCTTCATTGAAGAGTTGGAATTCGAGGTCGTTGGGTCCACGAATTCTTCAGAGCAGCCGGATTCTACACGTGCAAAAAGAGCCAAATAAATAAAACCAATCCACAAAAACTCCAATGAAAGCACCAAACTAGAGCCAAAAGAAAGACACTAAAATAGATGAATTAGGAACGGGCTCTCGGGAGGAGGTCCAATTGAGAGGGTGGTTGAGGGAGGTCCTGAGGTCCAACGAAGGGTACGACTACTCAACGTGGTCGTACGAAGAATACAAAAACGGGTACGGCTACTCAACATGGTTGTAAGAGGGATACACTACGCAGCGAGGTCGCGAGAGAAAAAAGAGAATAGAGCACAGAGATACTCACCAGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGGAGAAGACAGGAGGAAGACGGCGAACGGCACGGGCGCTCCGGTGAATCCTTCGGCAGCGAGGTGGTTGAAGACGGCGTAGGCTCCAGCGGACGGTGGCGAAATTCAAGCACGGTGAAACTGGGTGAGAGCAAAAGAGTTGGGTGAGGAAAAAGGAGATGAGAGGGCTACTCAGGCTTTTATAGCCAAGGGAGACGGAGAGAGTCGCTGAGAGACTCAGAAGCGCATGAGATCAAGGTTAGGTGGAGGAGATGGGGGCAGGTAGGGGAGGAGATAAGAGGGGGGACGGGTGCTGCAGAAGCGACAGCATTTAATGCGACACAACGGCATTTAATGCGCGAAGACTTTTGCGTCAG
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Scaffold PH01001857 Download
Protein sequence
Protein sequence
MDSPAIVLLGESYGKRTAEGGGFVLCPLYGRKSKAFMAASGSTNTVIISYLTKTAKSTIGLSLSVDNSQSMTAADFIAKRANEAVGAAETRHGEWSVTRLRPAAHGTASVESLSLGIGPRGGLGEQGDSVSRQLVLTNTSLVERRPENYEAIIVRPLSAVNALVRFAEEPQMFAFEFNDGCPIHLHQNKLYEEYSFFKCITSLTFLSFAPLEVNMELVYCFAELHQNKLYEEYSFFKYAIAAESMRDAALKDGALLRHLLNSFFFPAGERRDVSRQLVALWADSYQPALDLLSRILPPGLVAYLHTRSDEDSQNQCDEVPLSRRQKQILQQRRARGGKSTATPEQGMPPNSVDDGDFFRHTGVGPYGGADVRQTHASQYPTAQTPSPGIGIDPSHAVPHGAVPEAAYENNHQTGAPQLDSHAYSVDSNANGNLVSSSHSDFSVPAQVVVENTPVGSGRLLCNWYGFWRAFSLDHNRADLIWNERTRQELREALQAEVHNLDVEKERTDDIVPGNSVSEDAGGSDTLPRMSWNYAEFSVSYPSLSKEVCVGQYYLRLLLESGSNYQAQDFPLRDPVAFFRALYHRFLCDGDIGLTVDGAVPDELGSSDDWCDMGRLDGFGGGGGSSVRELCSRAMSIVYEQHYKVIGPFDGTSHITVLLDRTDDRALRHRLLLLLKALMNDLSNVEACVLVGGCVLAVDLLTVAHEASERTAIPLQSNLIAATAFMEPPKEWMYIDKDGAQVGPHEKDAIRRLWSKKSIDWTTKCWASGMSDWKRLRDIRELRWALSVRVPVLTPTQIGDAALSILRSMASAHSDLDDAGEIVTPTPRVKRILSSPRCLPHVAQAMLTGEPSIVEAAAFLLKAIVTRNPKAMIRLYSTGAFYFALAYPGSNLLTIAQLFSATHTHQAFHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPSAFAAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLAQHCHSLYDYAPMPPVTYPNLKDEMWCHRYYLRNLCDEIRFPNWPIVEHVEFLQSLLAMWREELTRRPMDLSEEEACKILEISLDDLVLGENGGSRQSSELSSANFANNIENIDEEKLKRQYRKLAIKYHPDKNPEGREKFVAVQKAYERMQWIYYLYTQASMQGLQGPQVWRLLLLLKAQCILYKRYGHVLEPFKYAGYPMLLNAVTVDKDDSNFLSSDRAPLLMSASELIWLTCASSSLNGEELIRDSGIPLLATLLSRCMCIVQPTTPANEPAARIVTNIMHTFSVLSQFESGRVEILKFGGLVEDIVHCTELEFVPSAVDAALQTAANVSVSSKLQNALLAAGFLWYVLPLLLQYDSTAEENEANEVHGIGARVQIAKNLHAVRATQALSRLCGLGGGGISSPSNQPAFNTLRALLTPKLADMLRNHPPKELLSNLKSNLESPEMER
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