gene PH01001762G0240
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01001762:160551 - 167008(+ stand)   Name
Alternate name Locus tag PH01001762G0240
Length of gene 6458  bp Length of CDS 1446  bp
Product information
Feature type
CDS
Product name
AP2 domain containing protein
Alternate name
Molecular weight
(predicted)
52047.4447200001  kDa
Isoeletric point
(predicted)
8.77437973022461
Length
481  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_153389 7
Please click OG5_153389 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT2G28550.3
related to AP2.7
related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activat
5E-71
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os07g13170.1 AP2 domain containing protein, expressed 4E-166
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 300 350 400 450 481
Detailed signature matches
    1. SSF54171 (DNA-bindi...)
    1. PR00367 (ETHRSPELEMNT)
    2. PF00847 (AP2)
    3. SM00380 (AP2)
    4. PS51032 (AP2_ERF)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR32467 (FAMILY N...)
  2. PTHR32467:SF0 (SUBF...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 237985 256 316 4.34E-24 cd00018 AP2 cl00033 -
superfamily 241562 256 316 4.34E-24 cl00033 AP2 superfamily - -
non-specific 197689 257 320 6.76E-27 smart00380 AP2 cl00033 -
non-specific 216148 256 306 1.80E-08 pfam00847 AP2 cl00033 -
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific DNA binding site R259,G260,T262,H264,C266,R268,R272,G274,Y281,Y283,L286 11 11 237985
 
DNA sequence
Upstream 1000 bp region from PH01001762G0240 gene.
TACCTGTAGTCCCCAGATCCGCTATGTGGCTACCGCAAGTAGATCGACCACGAGATCCACCCACATGACCAGTGGTCTCTCGACTTCGATGAGTGGCATGACAAAAGAGACTACGAGATCCGGGAGGAGCGACGCCACAACGACGAGCACAACAAGCGCATACGTCGGGAGACGCAAGCTCATCTCGAGACGTGCAGGCGCAGGGAGCGCGAGAGGAAGAGGGAAATGACGGTCAAGGCCAAAGAGGCCAACGAGGAGTTCAACACTGAGCTAGCAAGGAAGGGAAAATGGCCCCGGTTCACGCAGTAGGTCGGACCATTCCGTACTAGTTCTCGGAAGGTCTAATTTATTTCCATTCCAAAAAGGCGCATATGTATCGTAGGAGTACTTCAGTTTGTTGCATCATGCATGATGTTGTTTCTTAAGTACGTAACCAAACCCTGTGCGGTATGTTATTCCAAGCTTTATTATGAAGTCTATTTTAATTCGCAACTTCAAATCTCGTCATCTTTTCGCATTCAATTCTTCGCGTAGTAAGGCATCCAACAACATGAAAAAAACGAGTTCTGGAAGTTTACGGTTTGGTCTACGACCACAAAGTTATGAAGAGCACCACCTATCATTCCACTAGGATGTCTACACATCTTTCATCAGTGGTACTGTCTAGCATATGTGCATAATTGTGCCTCATGTTGTACCACACAATCCACATATTAGTTATTTTTTCTAGAATGCATTATGTATCACTTCTGGGACACGCCATGGAAATATTGTGAAGTGTCAAAGGTTTTCAAAGCAAAAAAATATTACCGGTCCATATATATATTTACTCTCAATTAAAAGAATGGTGTTATATTTGGTTACGTAGAGAGGTTTCCATTTTCAAGTTGGGGCTTGTTAAATGTTACATGTACAGGGTATTATGCATCACCTTACCTTCAATTGTTTTTGATCTTTCAAAAGGAAGTTCCTTTGTTATCATCTTACCACAGGTTCCAAAT
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CDS sequence
ATGGTGCTGGATCTCAACGTGGAGTCGCCGGGCAGGTCGGGGACCTCGAGCTCCTCCGCGCCCTACGCCGGCGGCGGCGGGGGAGCGTTCCGGTTCGACCTGCTCGGCGGTAGCCCCGACGAGGAGGGGTGCTCGCCTCCGGTCATCACGCGCCAGCTCTTCCCGTCGCCGTCGCCGTCTTCGGGTGCTGATGCTGCCGCCGCGGCGGCGGCGGCGGCGGTGTCGGATGAGTCGCCGCCGCCCGCTGGGGCGGCCTGGCAGCGCAGCGCGGCGGATCTCGGGGTGGCGCAGAGGGTGGTGGTGGGCGGCGCCGGCGGGAAGAAGAGCCGGCGGGGGCCGAGGTCGCGGAGCTCGCAGTACAGGGGCGTCACCTTCTACCGGAGGACCGGCCGCTGGGAGTCGCACATCTGGTTGGTCCACTACTTCGCACGCTTAAACCATGCTTGCTTGCACTTACTAAGAACCTTTTGTTTGCGTCGTCCATTTTGGGCAGGGATTGCGGGAAGCAGGTGTACTTGGGTGAGCTCCAATTCTACTTTCCTAGCTCAATCTGGTGCCCAAGTGTTAATTCTGGGTGGCTTCGATACAGCGCATGCCGCCGCCAGGGCCTATGATCGCGCAGCGATCAAGTTCAGGGGTCTCAACGCGGATATCAACTTCAATTTGAATGACTATGAGGAGGACTTGAAGCAGATGAGGAATTGGACCAAGGAGGAGTTTGTGCACATTCTCCGACGCCAGAGCACGGGGTTTGCAAGGGGGAGCTCAAAGTACCGGGGTGTGACGCTACACAAGTGTGGCCGATGGGAAGCCCGGATGGGTCAGCTGCTCGGCAAGAAGTACATCTATCTTGGGTTGTTTGACAGTGAAATTGAGGCTGCAAGAGCATATGACAGGGCAGCCATTCGCTTCAGTGGAAGGGAAGCTGTTACTAATTTTGATGCTACTTCCTATGATGGAGGTGCTCTGCCTGAAACTGAGAATGAGGCAGTGGTTGATGGAGACATCATTGATTTAAATTTGAGGATTTCACAGCCTAATGTGCATGATTTGAAAAGTGATGGTATGCTGACGGGGTTCCAGTTGAATTGTGATTCTCCTGAAGCTTCAAGTTCCATTGTTTCTCAGCCAATAAGTCCTCAGTGGCCTGTGCCTCCCCAGGGTACATCGATTCCACCCCAGTATCCACATTTGTATGCTTCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGGAAGTACCTATGGAGAAAAGACCTGAGTTGGGTCCCCAGTCGTTCCCCAGTTGGTCATGGCAAATGCAGGGCTCCCCTTTGCCATTACTCCCTACTGCAGCATCATCAGGATTCTCTACCGCCACCGGCGCCGATACCCCCCGCATGGTGTCGTCGTCCTCCCAGCCCCATCCGTTCACCGGCCACCAGCTCTACTTCCCTCCGACTGCCTGA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01001762G0240 gene.
ATAAATCAATTAAGATACTCGTCTGGCTGAGTGATTGGCATCAAAGTTGTTAACACCATATTGGGAGCATACTGGTTTGGCTCTTGGAATGGTAGATTTTGGTACCGGCCTATACAGGCTAACCGTTCTGGAGTTTAATATAATAATATATATTTATAAGTATATATATGTTTAATTATGTGCACAACAAATTTTACTTATAATCTTACTCCAAATGTGTAGCAGTAGGATGAAATATGATATATAGTTCAATGAGTTCATAAGTTCAAGATGTAGTTAAATACAATACAGGATCCTCTGACCTTGCCGGAGCCAATGCAGGGGTGGATGTTGATTCACCAACTGAGGATGAGCCCGAGGCTTTTATCTAGCCAATGAAACTGTATCAATAGATAGCAACGTACTAAGAATAGAAAGGAAATATAGATCAGATGGATCTCTACTTCTCTACATGCAGTACTAAATTGATTACTAATTGATTGCAACACTAGAAGATAGATGGCATTCATTGATTTACAACACCACAGGATGAAATCTCGATCTAGTAATTACTAATCAACCACTTACATGAGGCGACTAGTAGATGAGCTGCCGTTCATGCGTTTGTGGCCAAGTAGACTCGATGGAGAAGCTTTTTGTGGCCAAGTTTCGCGTCGTGCTTCTCGTCGGCTCATTGCCGTAGCACTGGTACCTCCTAGGATCTCAGCTCTCCCTGTGGCTTGGGTTTCTTCCTCCCTTAGAGCTAGGTCATCTTATAGTCGCGCTTGCCGTAGCACTAGCCCTTTGGCCGATTTTGAAGATGTAACTTGTATTTTGACCGGTACCAAAACAACCGGTAATATCAATTCTGTCCAATATATACCAATATGGTACACAGTACACAGCCTATGGTATAAACCGGTTACCGGCCGGTATGACCGGTACCAGAATGATATTGACAACTTCGATTGGCACTACTGTTACAGAGTTAATTTGAAGAGTGAGCACTAAGCTGGCCCCAC
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Scaffold PH01001762 Download
Protein sequence
Protein sequence
MVLDLNVESPGRSGTSSSSAPYAGGGGGAFRFDLLGGSPDEEGCSPPVITRQLFPSPSPSSGADAAAAAAAAAVSDESPPPAGAAWQRSAADLGVAQRVVVGGAGGKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLVHYFARLNHACLHLLRTFCLRRPFWAGIAGSRCTWVSSNSTFLAQSGAQVLILGGFDTAHAAARAYDRAAIKFRGLNADINFNLNDYEEDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEIEAARAYDRAAIRFSGREAVTNFDATSYDGGALPETENEAVVDGDIIDLNLRISQPNVHDLKSDGMLTGFQLNCDSPEASSSIVSQPISPQWPVPPQGTSIPPQYPHLYASPCPGFFVNLREVPMEKRPELGPQSFPSWSWQMQGSPLPLLPTAASSGFSTATGADTPRMVSSSSQPHPFTGHQLYFPPTA
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