gene PH01001626G0090
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01001626:54412 - 57608(+ stand)   Name
Alternate name Locus tag PH01001626G0090
Length of gene 3197  bp Length of CDS 855  bp
Product information
Feature type
CDS
Product name
BURP domain containing protein
Alternate name
Molecular weight
(predicted)
30097.9003199999  kDa
Isoeletric point
(predicted)
6.08903121948242
Length
284  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP07074850 PH01001626:55849 T T_C
PH01SNP07074860 PH01001626:55870 T T_C
PH01SNP07074870 PH01001626:55882 T T_C
Ortholog Groups (determined by OrthoMCL algorithm)
(0 result)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os09g30320.1 BURP domain containing protein, expressed 2E-48
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 284
Detailed signature matches
    1. SM01045 (BURP)
    2. PF03181 (BURP)
    3. PS51277 (BURP)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31236 (FAMILY N...)
  2. PTHR31236:SF0 (SUBF...)
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 202568 180 277 2.04E-30 pfam03181 BURP cl03923 N
superfamily 243575 180 277 2.04E-30 cl03923 BURP superfamily - N
non-specific 214992 185 268 7.82E-19 smart01045 BURP cl03923 N
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01001626G0090 gene.
TTCGAAGGCAGTTTGCAACCTTCTTGATGCGTGAGGTCATAAGCCCAAACGGGAAGTTCCACAATGTAGATTGAACTTGATTGGGATAAGATTGAAATTTATGGAACATGTGTGTATATTTGTTCACAAATGGTTAATTTTAGTTCACTTGAGTTAATTGATTTATGAAATGGATGTGCTTGTTTCTGAAATGAATGTGAATTAAATGTGCTTGTTTCTAAAATGAATATGAATTGGATGTGCTTATTTCTAAAATGAATGTGAATTGGATATGTACTTATTGTGTTTCTGCTAGTTTCAGAGAGCATGGCTAGCATTTCCTGAGGCTAGCCAATAAATGGAAATAGATTTAGCAATACAAAAAGAATATCACAGACGGTTCCCTAGGACAAACCGTCTATAATGTATAAGATATCACAGACGGTTCCATCTATAAACCGTCTGTGATGCATAAGATATCACGGACGGTTCCATCTAAAAACCGTCTGTGATAGTCGAATATCACAGACGGTTCTGAGTTAATAACCATCTGTGATAGTTGAATATCACAGACGGTTCTGAGTTAATAACCGTCTGTGATAGTATATATCACAGACAGTTCTGAGTTAATAACCGTCTGTGATAGTATGTATCACAGACGATTTGAAAACCGTCTGTGATGACCTCATGTCATCACTGACCTATAAACTCAGACGACTCATGAAAAACGTCTGTGATGTCATTTTTGAACTGTCTATGAAGACCTTTTCGGTAGTAGTGTTATGCGATTATGTTTGGGTATATTTGTATTCATATTTTGTTTTGCTATATTTGTACGCGTATTTTGGTTGTTACGTGTGTACTCCAGTGCTATATTGTATATCGACATCTCCAATGGAGTTACAATGTAGCTTTTTTTATACATTCTAAGTCACATGAAATCATGAAACCCTAATTTTCGAAACCTAAAATCAAAATTTTTGCAACCAAAATCCTAAATTTTCGAGACAATACTAGAACAC
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGAACCCGAAACCTAACCCGGTGAACCCTAGCCCTAATCCGATGAAGCCCCGCTCTGACTCGCCGCCATCGCCACCGGAGAAGACGACGTTGCCGGCCGAGCACGAATCTCCACGCAAGGCATCAAAGGTTCAATCCGGGCAGCTGACCTTTGCTGCTCGGGCGTCGCCGGCCGAGGCCTTCTGGCGCGCCGTCCTGCCCGACGCTCCCATGCCGGATGCCATCTTCGAGCTCTTGCACCCTGAGACCAACGTTCCAAACGGCGTCAAGGCCAACGACGACGACCCGCCAGCGCCGGTGCCTCCCATGAACTTCAACTACGATGACTACAGTGCCTTGCCTCGGAGCGAAGCCGTCGCCGCCCCCTCTTCGAATGTATTGAGCCGCCCCGGCGTCCGGAATGCCGCCTCCACCGACGACAGTGTCGTCGCGTCGTCCTCGACGGTGTTCTTCCTCGAGGACGTGGTGCGCGTCGGGGAGAGCCTGCCCTTCCGCAGCTTCCAGAGGGCCGCCGAGGCGTTGGCTCAGCTCCGTCTGTACACCGTCCGCGCCGTGAGGGCGGTCGAGGGGTCCAGCTTCGTCGTGTGCCGCGACGAGGCCGGCCCCAGCGCCGTGTACGGGTGCCGCGCCACTGGACCGGCGAGGGCGTACGTGGTGGACGTGGTGGGCGAGCGCGGGGACGACACGGTGATGACCGCTGCCGCCGTGTGCCACACCGACACGTCCCGGTGGGACCCGGAGCACGCCGCCTTTCGGCTGCTCGGCTTGAAGCCCGGCGGCGCGGCGGTCTGCCACGCCGTGCCCCACGCGCAGGTACTCTCGGCGGCCAAGAAGGAGAAGGGCCCCTCGGTTTAA
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Downstream 1000 bp region from PH01001626G0090 gene.
ATAAAGGATGTTTGTGCTTGTTCACATGATAGTTTTGTAAAAGTTATGCGTACCCAGTACCCGTCCAAAAAGATCAATAGGCTGTGATTGCTTGACCATGAAATGACCAATACGGATTTTGTTTTATATAAAAAAAACTCGTTTTTTTTCATCCTCTTTTTTTTTAAAAAAAAAAAAAAACTCGACAGGATGAACAAAAATGACTCTCTTTGTGGAATGTTCAAATAATAACAGTATTCACGCTACTCAGCACTGTTTGTAAGATAACAATTTCACAGGAATTTCGAAGAAATAGATATGAAAATCCTACCCTTTCGAGACTTGTTTAGAACATAGAAATTTCAAGACAGTTCAATTCATGTAGAGTCATGGAAATTCCTGAACCCTGTTACCCTCGGGCCTCGGCCTTAGGTGAGTCAGATCGCTCGGGTCCTGATAGGCCTGATCCGGCTCAACGTCCGGAGAAAACAAAGCCCAGAGAACTAAACACTAGCTTTATTCAGCGTAGGCGTGGCCCATGCAGTCAGAGCTGGCCATTGGGCCGTGCCGTACCGGCACGGCCTGGGTTTACTGTGCTTTGAGCTGTGTCGTGCCATGCCGGCTTGGTCCGGTCACCTCGTCGTGTCGTGCTGTGCTGGCCCACCTCGTCTCCGGCCAGGCACGGCCTAAAGCCCGTCGTGCCAGGGTCATACTGTACCAGCCCAAGTTCAACTCTAAGTAACTATAGACACCTGAAAAGACGACAACCGCTGTCGTCTAGGAAGACAAAGACACTCGTGCGTCATCCACACCCACTCCCCCTCGCCATAGCCTCCTCCTCCTCCTGGATGTCGATGAAGAACTCCGCCCACCTCGGCCACGTTGCGCGCTTGCGAAGGGGGTAAGAAGGACAGCGACGAGGAGATGGCTGGAGGGAGGGTAGTGGGCAACGGCGTGTGGGGAGGGAGAGGGAGAGAGAAAGGGAGAGGGAGGGAGGTGGCTGGAGGAGTGGAGGAGGGGGT
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01001626 Download
Protein sequence
Protein sequence
MNPKPNPVNPSPNPMKPRSDSPPSPPEKTTLPAEHESPRKASKVQSGQLTFAARASPAEAFWRAVLPDAPMPDAIFELLHPETNVPNGVKANDDDPPAPVPPMNFNYDDYSALPRSEAVAAPSSNVLSRPGVRNAASTDDSVVASSSTVFFLEDVVRVGESLPFRSFQRAAEALAQLRLYTVRAVRAVEGSSFVVCRDEAGPSAVYGCRATGPARAYVVDVVGERGDDTVMTAAAVCHTDTSRWDPEHAAFRLLGLKPGGAAVCHAVPHAQVLSAAKKEKGPSV
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BLAST search against this genome or other genomes in database  
 

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