gene PH01000969G0180
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000969:168903 - 175012(+ stand)   Name
Alternate name Locus tag PH01000969G0180
Length of gene 6110  bp Length of CDS 879  bp
Product information
Feature type
CDS
Product name
OsSPL16 - SBP-box gene family member
Alternate name
Molecular weight
(predicted)
32015.7099199999  kDa
Isoeletric point
(predicted)
6.35146713256835
Length
292  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP04980200 PH01000969:170666 A A_G
PH01SNP04980210 PH01000969:171375 G G_A
PH01SNP04980220 PH01000969:171784 C C_T
PH01SNP04980230 PH01000969:172641 C C_T
PH01SNP04980240 PH01000969:173456 A A_G
PH01SNP04980250 PH01000969:173679 G G_T
PH01SNP04980260 PH01000969:174515 G G_A
PH01SNP04980270 PH01000969:174747 G G_A
PH01SNP04980280 PH01000969:174810 C C_T
PH01SNP04980290 PH01000969:174883 C C_T
PH01SNP04980300 PH01000969:174904 C C_T
PH01SNP04980310 PH01000969:174961 G G_A
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_160420 6
Please click OG5_160420 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os09g32944.1 OsSPL18 - SBP-box gene family member, expressed 1E-81
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 292
Detailed signature matches
    1. SSF103612 (SBT domain)
    2. PS51141 (ZF_SBP)
    3. PF03110 (SBP)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31251 (FAMILY N...)
  2. PTHR31251:SF0 (SUBF...)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003677 DNA binding

Cellular Component

GO:0005634 nucleus

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 190527 36 66 2.97E-18 pfam03110 SBP cl03894 N
superfamily 190527 36 66 2.97E-18 cl03894 SBP superfamily - N
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000969G0180 gene.
GAGGAAAGAGAGAAAGCTCGAGCACGGGCACGGACGAGTAGCTAGCTAGCTGCTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAGTGCCGCGATTACCACCGGCGGCACAAGGTCTGCGAGGCGCACTCCAAGACGCCCGTCGTCGTCATCTCCGGCCGGGAGATGCGCTTCTGCCAGCAGTGCAGCAG
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CDS sequence
ATGATTGATTACCTCTCCCAGACACCCAGTGGAGCAAAATTAGATCACCATACTGATACTGCTTGGCGACTTTATCAAGTGCTCCTCAGTGTCCCAATAGGCTGGTTTCACTTACTTGCAGAGTTTGATGAGGCTAAGCGTAGTTGTAGAAAGCGCCTTGATGGACACAACCGACGCCGCAGGAAGCCACAGCCAGATAACATGAATTCTGGGAGCTTTATGACAAGTCAACAAGGTACGAGGTTCGCGTCGTTCGCTCCTCCAAGACCAGAGGTGAGCTGGTCTGGGATTATCAAATCCGAGGACAGCCCATATTACACCCATCAGGTACTTAGCAACAGGCAGCATTTTGTCGGCTCTACATCAACTTACTCCAAAGAAGGCCGGCGCTTTCCCTTCCTTCAGGAAGGAGATCAAATAAGTTTCAGCACAAGTGCGACCCTTGAGATCTCAGTGTGCCAACCTCTCCTCAAGACCGTCGCTCCACCGCCTGAGAGCAGCAGCAGCAACAAGATATTCTCCGATGGACTGACTCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCAGCTAATTCCTCCAGCGTCGAGGTCAGCCGGATGGTCCAGCCAACCGAGCACATCCCCATGGCTCAGTCCCTTGTTCCCAACCTGCAGTTCGGCAGCTCTTCCTGGTTTGCTTGCTCCCAAGCCTCCAGTGGCGTCTCCACAGCCGGGTTCACCTGCCCCAGCATGGATAATGGGCACCTGAACACCGTCCTGGTCCCGAGCTCGAACGGCAACGAGATGAACTACCATGGAATCTTCCATGTTGGCGCCGAAGCATCCTCGGACGGGACGTCTCCGTCTCTCCCCTTCTCGTGGCAGTAG
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Downstream 1000 bp region from PH01000969G0180 gene.
ATAAAAAATAAAATGTTAGATCGAGCTATCAATTGTAGTTGATAATCGAAACAGCCTCCCTGGGCTCCTAGGCGCCGTACGGGCAGCTTCTAGGTCCTCTCTCTCGGCCAGACGATTTGCCGCAGGCCTGAAAGCAAACACGCCATATATCGTATATGAATCTGGCCCAGAATTGACGTGGCCATATCGACCAAAAGAGATGTTTAGGATGTGCTGGCCAAAGAAAATTATGCCTGCTATCGCTCTAGTCGTCGCCTGCTGTCGTCTACTTGATCTGAAAATCCGGGAGCTGGCCATTCAACGCCCACTGTATAGAGACGAAGACTGCCTGTGAAGTCGAATTCAAACAACTTCAATGCCATATCATCTTGTGCGATGCTGTGTGTGAAGTGTGAACGGTGTCCCTTTCCAGATTGTTACAGGACAGTGACGCAGCACAAGTAGGCGTCGTACGTAGGGGATGGAAACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Scaffold PH01000969 Download
Protein sequence
Protein sequence
MIDYLSQTPSGAKLDHHTDTAWRLYQVLLSVPIGWFHLLAEFDEAKRSCRKRLDGHNRRRRKPQPDNMNSGSFMTSQQGTRFASFAPPRPEVSWSGIIKSEDSPYYTHQVLSNRQHFVGSTSTYSKEGRRFPFLQEGDQISFSTSATLEISVCQPLLKTVAPPPESSSSNKIFSDGLTQVLDSDCALSLLSSPANSSSVEVSRMVQPTEHIPMAQSLVPNLQFGSSSWFACSQASSGVSTAGFTCPSMDNGHLNTVLVPSSNGNEMNYHGIFHVGAEASSDGTSPSLPFSWQ
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