gene PH01000922G0150
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000922:84959 - 86079(+ stand)   Name
Alternate name Locus tag PH01000922G0150
Length of gene 1121  bp Length of CDS 687  bp
Product information
Feature type
CDS
Product name
homeobox associated leucine zipper
Alternate name
Molecular weight
(predicted)
25312.8407199999  kDa
Isoeletric point
(predicted)
4.7935676574707
Length
228  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_156025 6
Please click OG5_156025 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os02g43330.1 homeobox associated leucine zipper, putative, expressed 7E-94
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
  2. Domain
1 50 100 150 200 228
Detailed signature matches
    1. SSF46689 (Homeodoma...)
    1. PS50071 (HOMEOBOX_2)
    2. PF00046 (Homeobox)
    3. SM00389 (HOX)
    1. PF02183 (HALZ)
    1. PR00031 (HTHREPRESSR)
    1. PS00027 (HOMEOBOX_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR24326 (FAMILY N...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0043565 sequence-specific DNA binding

Cellular Component

GO:0005634 nucleus

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 238039 52 105 5.67E-15 cd00086 homeodomain cl00084 -
superfamily 241599 52 105 5.67E-15 cl00084 homeodomain superfamily - -
non-specific 200956 52 102 1.30E-15 pfam00046 Homeobox cl00084 -
non-specific 197696 52 102 1.01E-14 smart00389 HOX cl00084 -
specific 202143 104 148 5.57E-11 pfam02183 HALZ cl02577 -
superfamily 207657 104 148 5.57E-11 cl02577 HALZ superfamily - -
non-specific 203350 75 100 0.0015008 pfam05920 Homeobox_KN cl00084 N
multi-dom 227863 53 105 2.67E-06 COG5576 COG5576 - NC
multi-dom 224117 53 150 0.000513535 COG1196 Smc - C
multi-dom 225471 59 148 0.00221266 COG2919 COG2919 - C
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific specific DNA base contacts I92,Q95,N96,A99 6 4 238039
specific DNA binding site F52,K70,K76,Q89,A91,I92,Q95,N96,R98,A99,R100,R102,S103 18 13 238039
 
DNA sequence
Upstream 1000 bp region from PH01000922G0150 gene.
TCCCAGATTTTTCAAAACACCACACAGCTATGTCCATATTGTTATTAAGTTCTACTTCTGCTATCAACTTTTTTAAACTCTCCCACTGATTTGCTTCCTCTTCCCCAAAACATCTCTTGAAAGTAATATTCCAACCATCATCAACCAGTCCCTCAGCCACACTCATGTCAAGAAATTGGCAAATATTAAACAGACTCCTATATTTGATCTTAAAGGGACAGTCTCCAATCCAAGAATCGCCCCAAAAAGAGACATTTTGCCCATTTTCAAGTTTATATTTAGCACCTCATTTAAACAAGGTCTTAGCTTTAAGCATCTATATCTATTTCTCATAAACTCTGATCCGGTCTAAGGTTGCTGCACGCAAGAACGGGTATAAGAATGTAACAGACCGGTTTAAGCTGAGCACATGCATCGGCGGCCCGGCCATCTGTTCGACGCGGAGCAGCTGGACGGACACGTAACGCCGGACTGGAGATAAGCTCGTCTTGTTTTACAGCTAGGATCAATGAACAGGAGTAGAAGCTCAACAATGACATGTTTATTCCATCGAGTCGATCGGGAGCGCGGGTACGTACAGCGACCGCTTACCCAGATGCCGGGAACCTGGCCAGAAGCCTTCCACGCAAGCCGCAAGCCCCTACGCAACGTGACAAGCCCCCTGCCACGCTGTCCACCTAGCCATTTAGCCAAGCCCCCTGCCGACGCTGCTTCGATTCGCCTCTCCTCGAGAAACATTTCCTTTCCTTTCCTTCCCGCAGAAACTTAACCGAGAGAAGATCACGCACTCCGGCTCCGCGCGCGCGCGCACCAACGTGTCCGGCGCCGGCGCGGCCTCAAATCACTCTCGAGACGGATAACCATTCGCGCGTGGTGAGCGACGCGATGCGCAACACCTGGCGTGTGAGCGAAAAACGATCGAGGGCCTACATGTTCTGATTAGAAAGCGCGGTGTGCCACGTGTGAGCACCGCGCCGGCTCGACCCGTGCGCCGCGCACCG
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGGAGAGCGACTGCCAGTTCTTGGTGGAGCCGCCGCAGCTGCACCAGTCGTACGCCGCGGCGGTGGACGACGGCCAGTTCTTGCAGCAGCTGAGCGGCGGGGACGCGACGGCTGCGGGGAGGGGCGCCGGTGGCGGGGAGCGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACCACGTTCCACGAGCGGCGCGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTGGGGCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCGAAGCAGCTCGAGCAGGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAAGCAGGAGAAGCTCACCTTCGCCGCGCAGTTGGAAGAGCTAAGGGAGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGCCGAGGGGGAGGACCAGAGGAATAATGTCAGCAGCTGCCTCGCGGAGGAGGACGAGGCCGGCGCGGCGCCGGTGACGGTGGCGGACGTCTCGGGTGACTCGGCGGCGGGCGGGTACGACCACTTCGCCTACGGGGGTGGCCTGCCCGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGATACATGGCCGCTGGTGGAGTGGAACGCAGTCGCATGA
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Downstream 1000 bp region from PH01000922G0150 gene.
AAAAAAACCATCTGATCGGTCGGCTCCGTCGACCTTAGGATATCCATGTTCGTGAAATGGCTTCAGAGCCCGTTCGTACAGATCAGCGTGCATGCCGTCTACCCACTTAGTCTGCATGTCGTTCATGTTCTAGGATCTAGACGCGCGTTCTTGTGTTCGCGCGCGCATGTCACTGTAGGCCATCGCCCCATCGATCGATCCAGCACGTACGACGACTAACACCGAGGACGAGAGAAATATCGCTGTCGTTGGGGGCAAGGTCGCCGTCGCACCACAGGAGATGGTTCGTGTTTTCTCTTGCCCGTAAGGACGGTAGCAGACGATCCGCTCTCGACGTGTCGATCGTTTGTTCGTCTCGGCACTTTGCGCAGGGCGTAACGCAAAGACGAGGAGAAAAGGAAAGGGGGAAAAGATACGGGAGGTGCCTGTCAGTGGGAGAGAGGAGAGGGTGCGGCGACAATTAAGAAAGTTCTGGACCCGGCCCCGGCGGCCAAATGGGTGGTGGAAACGACCCACTGGACAGGAAAGGAATTTTATTATTATTTAATCTATTTTTAAAAAAATATTTTAAAGATAATACCTCTTTAACTTTATTTCCAATTCTAACCCTTTGACCATATGGCAAAAACACGTTGTCATGTCACAGATCTTGGCGTGACAAACGATTGCTGTCAGGACTTAACCTAGAAACGGATACGTGTTGACTCGGAGGGCTATCATGATAGATTTGGTCACACCGCGGTCAGTGATATGACAAAACAGTTTAGTAACGCAACAGGTCATAGAGATGTTATCTTTAAAATATCTTTAAAAATAGATTAAAAAAAAGCTCACATGAAAGCGACGCGAAACCAAATGAGAAGTAGGAATTAATTCGTATAGATAAGATACATAGCTCCAGTAGCTCTGGAAACTCGCATGGATGTCGAATTAATATTGTTTCCAGTGAAGCAGGAGCAAGAGTGATCCAGTTCGGGACTAGAGATAAACTAGATCAGGGT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01000922 Download
Protein sequence
Protein sequence
MESDCQFLVEPPQLHQSYAAAVDDGQFLQQLSGGDATAAGRGAGGGERKRRFTEEQVRSLETTFHERRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRAQYDALHARVESLKQEKLTFAAQLEELREKLNERQDQSGSCDGAEGEDQRNNVSSCLAEEDEAGAAPVTVADVSGDSAAGGYDHFAYGGGLPEPFCATPELWDTWPLVEWNAVA
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BLAST search against this genome or other genomes in database  
 

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