gene PH01000906G0020
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000906:2932 - 3740(- stand)   Name
Alternate name Locus tag PH01000906G0020
Length of gene 809  bp Length of CDS 486  bp
Product information
Feature type
CDS
Product name
hsp20/alpha crystallin family protein
Alternate name
HSP20
Molecular weight
(predicted)
17446.3643199999  kDa
Isoeletric point
(predicted)
5.67310714721679
Length
161  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_155411 3
Please click OG5_155411 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT5G12020.1
17.6 kDa class II heat shock protein
17.6 kDa class II heat shock protein (HSP17.6II); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1)
1E-52
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os01g08860.1 hsp20/alpha crystallin family protein, putative, expressed 1E-62
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 20 40 60 80 100 120 140 161
Detailed signature matches
    1. SSF49764 (HSP20-lik...)
    1. PS01031 (HSP20)
    2. PF00011 (HSP20)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR11527 (SMALL HE...)
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
KEGG orthology Functional Subsystem Pathway
Genetic Information Processing Folding, sorting and degradation Protein processing in endoplasmic reticulum  
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
ID for KEGG orthology Reaction description EC number
K13993 HSP20 family protein
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 107221 56 142 1.07E-27 cd06464 ACD_sHsps-like cl00175 -
superfamily 241659 56 142 1.07E-27 cl00175 alpha-crystallin-Hsps_p23-like superfamily - -
non-specific 215655 56 142 1.28E-30 pfam00011 HSP20 cl00175 -
non-specific 107229 56 142 2.35E-26 cd06472 ACD_ScHsp26_like cl00175 -
non-specific 107219 59 142 1.88E-16 cd00298 ACD_sHsps_p23-like cl00175 -
non-specific 107228 55 142 2.19E-14 cd06471 ACD_LpsHSP_like cl00175 -
non-specific 107247 64 142 6.17E-10 cd06526 metazoan_ACD cl00175 -
non-specific 107227 64 140 4.51E-06 cd06470 ACD_IbpA-B_like cl00175 -
multi-dom 223149 44 143 3.69E-19 COG0071 IbpA - N
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific putative dimer interface D56,V57,M58,E59,L60,V67,D69,P71,G72,R116,G136,V137 12 12 107221
 
DNA sequence
Upstream 1000 bp region from PH01000906G0020 gene.
TAGCATCCAACGGTCCAACCTTTGTATTGAACTTGTGTTAACTGGGATAATGGTATGTACCTGTCCAGGTATTGTCAGAGGCGTCGATGTGCAAAGGGGCCTGTTATATGTAATCACGCCTGTTCCTCTTCAATGCCTACAGAGCGTAGATCTTTTGCTGCAGGGGCTCATTGAGATACCGACATCTCTTTTGCAGGTAACCATTTTGCCCTGGCAACAGTGTTTTTCTATGCGCCATGGCAATATTTCGTTGAGCTTAAGTACTTCGATAAAGAATGGCCCACCGTGATAGACTATTTATGCCCAGAATACCATTTTTCGCCCTGGCAACAGTATTTTTCCATGCGCCATGGCAATATTTCGTTAAGTACTTGGATAAAGAATGGCCCACCGTGATAGACTATTTATGCCCAGAATACCATTTTTGTCTATAAGCAAGAACGGCAATGTGTTCCCTTTGCATGTTTAAAGTAGTTCAATCAGATATTGGCTAATCCAGAAAGAAGTAAGCATTAGCGTTACGTGTACGCATAAACAATAGATAGAATTCAGCGGTACCGCATAGATATCAACTTGCAAATTTGTAAGTTATGGTTCAGTTTATGAATGGAACGATATTTCCTCAGAAATTTCAGTAGGCAACATCTCTGGAGCATAATAGTCGCGTTCGGAAACGTAGTTTAATATGCAATTTTTCCTTGCCAAACTCTGTTATACGGACGTGTTGTTTGATAAGCAAAATTTCCTTCCCCTTCTGATCTTTGCTCTACTGCCAACGCAGGTCCGGGGGTGTGTGTCGCCGTACATGTCCACAAACGTGCTGCACAAGATATCAGAGAAGGATGTCGAATGCAGAGATGTTTTAGCCTAAGGATTGAGATTTATTCAATCATAACGTCATGTCCAATTTCTTTCCATAATAGAACTGGCCAGTAGATGCAGATGCTTGGATTGTTTTGCTCAATCCCAAAACTTTTCTAAGCTCAAAAGATTCTGAGAGA
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CDS sequence
ATGGAGGGCAGGATTTTCGGGCTGGAGACGCCGCTGATGACGGCGCTGCAGCAGCTGCTGGACATCCCGGACGGCGAGTCCGGGGGCTCCGGCGGTGCCAAGGCGGCGGGCGGGCCCACGCGCGCCTACGTCCGCGACGCGCGCGCCATGGCCGCCACCCCGGCCGACGTCATGGAGCTGCCGGGGGCGTACGCGTTCGTGGTGGACATGCCGGGGCTCGCGTCCGGGGACATCAAGGTGCTGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGGGAGGAGAAGGAGGACGTCAAGTACCTGAGCATGGAGCGCCGGATGGGCAAGTTCATGCGCAAGTTCGTGCTGCCGGAGAACGCCAACATGGACAAGATATCCGCCGTGTGCCGGGACGGCGTGCTGACGGTGACCGTGGACAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGGCCATCGAGGTCAAGGTCGCCTGA
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Downstream 1000 bp region from PH01000906G0020 gene.
GGGGAGTGATGGGATGGGAGGGTGTGTTTATATAGGTGCTACGAGGTGGGGAGTCTCGAATGTGATGGAAGGTTCTGAAAGGTGGTGGAATGTGCGCGGCGGGTCACGCCATGCGATGGTGGAGAAACATCTAGAGATTCCTCCGTTGGGAGCTGGTCTTTTTCTATGGAGTAAAGCGCTGTACGGCTGGCTTCGTGGGCCCACATGTCCTTGGTTGGAGCTTGCGCTTTTCCTCCCCCTCTTTTTTCCTTTTTGGAAGAATTTCTGTCCTCCGGTGCAGAAGCTTCGCCAGTCTTCTACGGATTCATAGTGACCTTTACTACTGCTGAAACGCACTACCTTGCGGCTTGCTTCAGTGCAGGCAGAGGGCTCCAGTTCAAACCGCTGATTACCGTAGCAACGTCTTACCTCATCAATCTAAGAGGCCTTTATTTTCATGACTCGGATGTACTTGCTCAGTGATGCTGCAAAAATCACACGACTTGATAAATAACATTAACTGTTAACGAATCCTAGGACTCACTCCCATCCTCACGTCGGATGTTACTTTCCGGTTCATACATTGTTTGCGGTGTTACTGAGCAAAATTCTCTTGAGTATTGGGCATAACAACGATGTTTAGCACGAATACATTGTCATATCAATTATCAATAGAACTTCACACTATTCGTGGATGATAAACACATGATTTCAACAACCAAAATCTAGGCAAAATTGGCTATAAGACATCACAATTTGGTGTCATTTATCGCCGGACACCCAAATTTCGTGTATTTGCCAGAACAAACTACTAAAATGTGGTTTTTTACTGTAGGACACAGATGCTATTATAATAATATTATTCGTTGTTTTGGAGAGAAACAATTCAAAATGATCTTCATGCCCTTATCCTCTTCTTCTTCCTCCTTGTTCCTTCTCCGGTGATCCCCTCATGGTCGGCGGCGAAATCAGACGGAAATCGACGGAAGTCATGTGCGCATGGCGTGTTCCTGAATTAGGGG
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01000906 Download
Protein sequence
Protein sequence
MEGRIFGLETPLMTALQQLLDIPDGESGGSGGAKAAGGPTRAYVRDARAMAATPADVMELPGAYAFVVDMPGLASGDIKVLVEDERVLVISGERRREEKEDVKYLSMERRMGKFMRKFVLPENANMDKISAVCRDGVLTVTVDKLPPPEPKKPKAIEVKVA
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