gene PH01000725G0050
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000725:55924 - 58263(- stand)   Name gst
Alternate name Locus tag PH01000725G0050
Length of gene 2340  bp Length of CDS 657  bp
Product information
Feature type
CDS
Product name
glutathione S-transferase
Alternate name
GST
Molecular weight
(predicted)
24569.3802199999  kDa
Isoeletric point
(predicted)
5.54557418823242
Length
218  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_126942 15
Please click OG5_126942 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT3G62760.1
Glutathione S-transferase family protein
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-termina
5E-69
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os01g27260.1 glutathione S-transferase, putative, expressed 1E-118
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
1 20 40 60 80 100 120 140 160 180 200 218
Detailed signature matches
    1. SSF52833 (Thioredox...)
    1. PF02798 (GST_N)
    2. PS50404 (GST_NTER)
    1. SSF47616 (GST C-ter...)
    1. PS50405 (GST_CTER)
    1. PF00043 (GST_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR11260 (GLUTATHI...)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
KEGG orthology Functional Subsystem Pathway
Metabolism Metabolism of other amino acids Glutathione metabolism  
Metabolism Xenobiotics biodegradation and metabolism Metabolism of xenobiotics by cytochrome P450  
Metabolism Xenobiotics biodegradation and metabolism Drug metabolism - cytochrome P450  
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
ID for KEGG orthology Reaction description EC number
K00799 glutathione S-transferase EC:2.5.1.18
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 198296 93 210 1.04E-54 cd03187 GST_C_Phi cl02776 -
superfamily 243175 93 210 1.04E-54 cl02776 GST_C_family superfamily - -
specific 239351 3 78 1.11E-34 cd03053 GST_N_Phi cl00388 -
superfamily 241832 3 78 1.11E-34 cl00388 Thioredoxin_like superfamily - -
non-specific 239344 5 79 3.22E-20 cd03046 GST_N_GTT1_like cl00388 -
non-specific 215674 109 205 1.42E-18 pfam00043 GST_C cl02776 -
non-specific 238319 4 75 3.89E-16 cd00570 GST_N_family cl00388 -
non-specific 198290 94 209 9.63E-14 cd03181 GST_C_EF1Bgamma_like cl02776 -
non-specific 239345 5 74 4.27E-13 cd03047 GST_N_2 cl00388 -
non-specific 198288 142 209 4.72E-13 cd03178 GST_C_Ure2p_like cl02776 N
non-specific 198286 98 199 1.67E-12 cd00299 GST_C_family cl02776 -
non-specific 217234 2 77 1.47E-11 pfam02798 GST_N cl00388 -
non-specific 239354 5 71 7.03E-11 cd03056 GST_N_4 cl00388 -
non-specific 239346 17 79 7.34E-11 cd03048 GST_N_Ure2p_like cl00388 -
non-specific 239340 12 71 1.74E-10 cd03042 GST_N_Zeta cl00388 -
non-specific 239355 22 79 3.36E-10 cd03057 GST_N_Beta cl00388 N
non-specific 239348 4 79 9.32E-10 cd03050 GST_N_Theta cl00388 -
non-specific 239343 11 72 8.85E-09 cd03045 GST_N_Delta_Epsilon cl00388 -
non-specific 205595 7 79 1.10E-08 pfam13417 GST_N_3 cl00388 -
non-specific 198298 143 205 1.31E-08 cd03189 GST_C_GTT1_like cl02776 N
non-specific 222111 133 200 1.71E-08 pfam13410 GST_C_2 cl02776 -
non-specific 222110 17 78 1.82E-08 pfam13409 GST_N_2 cl00388 -
non-specific 239349 5 75 2.95E-08 cd03051 GST_N_GTT2_like cl00388 -
non-specific 198326 143 209 9.23E-08 cd10293 GST_C_Ure2p cl02776 N
non-specific 198324 150 209 1.06E-07 cd10291 GST_C_YfcG_like cl02776 N
non-specific 198299 107 174 3.81E-07 cd03190 GST_C_Omega_like cl02776 C
non-specific 239342 15 78 1.59E-06 cd03044 GST_N_EF1Bgamma cl00388 -
non-specific 198292 122 204 2.10E-06 cd03183 GST_C_Theta cl02776 N
non-specific 198305 147 210 4.78E-06 cd03196 GST_C_5 cl02776 N
non-specific 198287 132 199 1.52E-05 cd03177 GST_C_Delta_Epsilon cl02776 N
non-specific 198289 147 207 1.92E-05 cd03180 GST_C_2 cl02776 N
non-specific 198315 136 207 3.87E-05 cd03206 GST_C_7 cl02776 N
non-specific 198319 137 209 4.23E-05 cd03210 GST_C_Pi cl02776 N
non-specific 239337 15 77 5.23E-05 cd03039 GST_N_Sigma_like cl00388 -
non-specific 239374 51 78 5.89E-05 cd03076 GST_N_Pi cl00388 N
non-specific 198316 128 206 8.59E-05 cd03207 GST_C_8 cl02776 N
non-specific 198325 127 209 0.000105114 cd10292 GST_C_YghU_like cl02776 N
non-specific 239347 5 75 0.00010591 cd03049 GST_N_3 cl00388 -
non-specific 239357 17 71 0.000362599 cd03059 GST_N_SspA cl00388 -
non-specific 198310 143 209 0.000452317 cd03201 GST_C_DHAR cl02776 N
non-specific 198327 94 210 0.000503971 cd10294 GST_C_ValRS_N cl02776 -
non-specific 198297 110 209 0.000909212 cd03188 GST_C_Beta cl02776 -
non-specific 198301 140 197 0.00139027 cd03192 GST_C_Sigma_like cl02776 N
non-specific 198291 147 207 0.00204563 cd03182 GST_C_GTT2_like cl02776 N
non-specific 198318 140 215 0.0036472 cd03209 GST_C_Mu cl02776 N
multi-dom 166036 4 215 3.50E-56 PLN02395 PLN02395 - -
multi-dom 166114 4 210 3.97E-46 PLN02473 PLN02473 - -
multi-dom 223698 5 215 1.38E-31 COG0625 Gst - -
multi-dom 233333 12 71 9.69E-07 TIGR01262 maiA - C
multi-dom 223512 110 208 4.56E-06 COG0435 ECM4 - N
multi-dom 172475 17 206 1.07E-05 PRK13972 PRK13972 - -
multi-dom 185068 10 72 7.66E-05 PRK15113 PRK15113 - C
multi-dom 166458 17 209 0.00198916 PLN02817 PLN02817 - N
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific dimer interface D99,V100,E103,V104,Q108 5 5 198296
specific substrate binding pocket (H-site) Y110,P111,S114,P115,V117,Y118,I122,L126,F175,Y178 10 10 198296
specific N-terminal domain interface T102,E105,A106,Y110,S114,V117,S171,F173,P174,F175,Y178,R204,S206,K209,L210 15 15 198296
specific GSH binding site (G-site) A14,L54,V55,P56,E67,S68 6 6 239351
specific dimer interface F52,L54,L63,F66,E67,R69,A70,R73,R77 9 9 239351
specific C-terminal domain interface T13,A16,R17,V20,E23,E24,R69,A72,R73 9 9 239351
 
DNA sequence
Upstream 1000 bp region from PH01000725G0050 gene.
CAAATATGAAGGTAATTGCAAAATATGCTAAAAACTATGGACCCTTGCAAATTTTTCGTGTGGTTTGCATTGGAGTATCTTATAGTTAGTATATGAGGGAGTAACTACACCTAGGAGTAAAAGATATTAATCATATATGTACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATAATGGGTAATTCAGTGCTAAGGTGCTAATGTCAATCTTGACATTGGATCTGGATTGAACAACCAAGATTAATGCGGGCTCCTACCTCCAAACCATTTAATCACCTTGCATGCTCCCACCTCTAATGCGTCTTCATTAATACACCTTCATTAAACATCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATTGTTAAAACGATAGAAGCCACCACCGTTTGCTCTTAAAGGGTATAACTTCCCACA
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CDS sequence
ATGCCGCCCGTGAAGGTGTTCGGCACGGCGATGTCGACCGCCGTGGCGCGCGTGCTAGTGTGCCTGGAGGAGGTCGGCGCCGAGTACGAGCTCGTGACCGTCGACTTCCTCACCGGCGATCCCATGAGCCCCGCGCACCTCGCCCGAAACCCGTTCGGTCTCGTCCCAGCGTTCCAGGACGGAGACCTGCTACTCTTCGAGTCGCGTGCAATCGCAAGACATGTGCTGCGCAAGTATAGATCAAGTGAGATCGACCTGCTAAGGGAAAGTTGCCCCAAACAAGCTGCTTTAGTGGATGTCTGGACGGAGGTTGAAGCACATCAATACTACCCTGCCATCTCGCCTATTGTGTACGAATGCCTCATATTGCCCGGGTTATATGGTACCGCTACTAACCAAAATGTCGTCGATGAGTGCTTGGGCAAGCTGAAGAACGTGCTTGAGATGTATGAGGCGCATCTATCAAAAAACAAGTACTTGGCTGGAGACAACATTAGCTTCGCGGACTTGAGCCATTTCCCGTTTACATTCTACTTCATTGCTACTCCTTACGCATCCGTTTTCGACTCGTACCCTCGTGTGAAGGCATGGTGGGAGGACTTGATGTCGAGGCCATCGTTCAGGAAGCTTGGTGCAAATATGCCCACAAGATTTTAG
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Downstream 1000 bp region from PH01000725G0050 gene.
TAAGCAAGCACTGAAGCACACACGGACACTTATGCCACAACATCGGACCGAGACCCACTTTCCCACTGTACTCACTCGTGTGCATATACCGCGGAACCTGGAGGTATATTGTGGACACTGGATCGTCCAAGCCGCGAGGTGCGACCTTCTCCCGCTAGGATGAGGGTGGCTTTGTATGGCATCCCAAATTTTGTTGTCCTTCAAAAACGTGTTTCAAATCAATTATTTTAAAGCAGTTGGATTTCATTTGGAGTTCTTGCAATTATCTAAAATCTAGATCCTAAAATTCAAATCCAAATCAAACTCCCTCAATTCAAATTTCGCTCTGATCTTTCTTGGACCGAATCCAATTCTTACTTTTCCTCCCGATCCATTTCTTTCCTCGGCCCAGCCAGTCCGGCCCACCAGCCCATCTCTCTATGCTTCTCCCTGCCTCGCTCTGCTCTGCTCGCTACTCGTCCTAGTTGCAACTTGCAACCACACCGAGCCGCGTCCGCACGCCTGCGATGCTCAAGCCGAGTCATCGCGCGTCACTTCGATTGGAAACTGCGGCATTGAATGACCGTATTCACTACACCATCATCGGCCACAAACGGCCGTTTCCATCCGCGTTCACGCCAACTCAAGACCCGAGCCGAAACCGGCGTAGTGTATATCATCACGCCCGCGTCCGCTCTGCTCCCCGCCCGAGCCTATAAATTGGAGCATTGAGATCCCCTATGACTCTTTCGCAGCCTTACCAAACCCCGCAATTTCTTATCTCTCTCTCTCTCTGATAGGAAATAAAAGAAAAGGTCGAGATCTTGTTTGCAGCAAAGACGTATCATCACCAAAAGAGTTGATTGCTTGAAGCTGGACAAAATATTGAAGATCATTGAAGACTAGATGAAAGCTTTTTGTTATTCATAGTAGTGCCTGTTATGTTGGTTGTTCTGCTTCTTGGTTGGCTTTGGTTGATAGTACCTTAGCTGGTGGTCTTTTAGTTTGTTTTGCTCATTCTT
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Scaffold PH01000725 Download
Protein sequence
Protein sequence
MPPVKVFGTAMSTAVARVLVCLEEVGAEYELVTVDFLTGDPMSPAHLARNPFGLVPAFQDGDLLLFESRAIARHVLRKYRSSEIDLLRESCPKQAALVDVWTEVEAHQYYPAISPIVYECLILPGLYGTATNQNVVDECLGKLKNVLEMYEAHLSKNKYLAGDNISFADLSHFPFTFYFIATPYASVFDSYPRVKAWWEDLMSRPSFRKLGANMPTRF
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