gene PH01000610G0210
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000610:148744 - 150527(+ stand)   Name
Alternate name Locus tag PH01000610G0210
Length of gene 1784  bp Length of CDS 903  bp
Product information
Feature type
CDS
Product name
OsFBK25 - F-box domain and kelch repeat containing protein
Alternate name
Molecular weight
(predicted)
31993.1771199999  kDa
Isoeletric point
(predicted)
5.89233779907226
Length
300  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP03527030 PH01000610:149104 A A_C
PH01SNP03527040 PH01000610:149222 T T_G
PH01SNP03527050 PH01000610:149375 C C_T
PH01SNP03527060 PH01000610:149410 G G_C
PH01SNP03527070 PH01000610:149495 T T_C
PH01SNP03527080 PH01000610:149567 G G_T
PH01SNP03527090 PH01000610:149621 A A_G
PH01SNP03527100 PH01000610:149636 C C_G
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_140368 3
Please click OG5_140368 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os11g14140.1 OsFBK25 - F-box domain and kelch repeat containing protein, expressed 6E-159
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 300 300
Detailed signature matches
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR24412 (FAMILY N...)
  2. SSF117281 (Kelch motif)
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
multi-dom 177814 86 205 1.30E-05 PLN02153 PLN02153 - NC
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000610G0210 gene.
CTGTGCTATAGGTCAAATAAGGGATAAGGGTTTACTACCGTGTTGTGCTGATCTATAGTAGTAAAATAGTGATAGCATTTTCTCGAGATGAGATACCGATCGATGCGTCGGTAGTGTTACATGTCACTTTAAGAGGTAACTTTTCCAATGAAGCTTTTACACTTCAGTGGTGTGTCTAATGAATTTTTCTGACGTCAGAGAATGCGAACTTGTGATCTGAATCGGTTGATTATGGAAGGATGGACTTTTAGTCTGTTTAATAAGGATGGACTTTTAGTCTGTTTAATCGTTCAATATTACGAGCATTGTAGCATTACTGGGTAAGCTATCAACGCGAGGTAGATCTGAGGAATGTGATCAATTACCTAGCTGACCAAAATCGAGAGCTTGCATTCCCTAGCTCAAGGTTTATCAATTACAACAAAAAATTATCCTCCAGTCATCTTGGACAATTTCCCATTCCTCAAACTTATCACTAACAAATCTCAAAAATAAAAAGAGAGGGTCTCATCACAGGCATTGCAAAAGATAAAGATCCCTCTCACTCAGTATAGTCAATCACAAGACTCTGTCATGGACTGTGCTGGATGATATCATGGCACAGGGAAAGTCTTTCTTTGAGCCATTAAAAATTAGACAACCATGTCTTGCAGCCAAAGGCACTAGCAGTCAGTATCACCTTTTGTATTCATCCATTCTCAGAGAGGAGATCAAATTTTACTACAAATTGGCTTTTGTGCTGATCTACACAATCACAATTCATTCTTCTAGACGCAAATATTGCATTCCATTATTGATCGATACTACTAACATATAATATCATCATAAGTCTCGCTTTAAGCAACAAGAAAAACTTTCCCATGAAGAACAGCGGCACAAACCGGCAGAAAAACAGCCGTTTGCTAGTATGCTTTTATGCCAGTTTGTGATTTTGTGTTTATATATTAGCTTAGCAGTGACGAACCGTCCTATCACACGGTGCCACGTAGCGTTGTGGCCTT
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGCGGCGCGTGTGCCGCGGGTGGAGTAGCGCCGCGGCTGCGCCGGCGTTCGCCCTGGCGCGCGCCGCGGCCGGCGCGAACGAGGATCTGGTGTTCCTAATGCAGTTCGGCAACCCGGCGGCTGGGGATGATGGCCCCAAGGACGCCGACGCGCCGGCGTACGGGGTGGCGGTGTACAACGTGACCACAGGCGAGTGGCGCAGGGAGAGCGCGGCGCCGCCGGTGCCGATGTTCGCGCAGTGCGCGGCGGTGGGGAGCCGCCTCGCGGTGCTGGGCGGGTGGGACCCGCAGACCTTCGAGCCCGTGTCGGACGTCCACGTGCTCGACGCCGCCACCGGCGCGTTCGTTCTTCGCCACAAGAATGCGCTCAAGACCGCGGAGGCGTACGACGCCGGGGCCGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGCATGGCGACCGTCGCCGGCGACCGGTTCCTGGCCGTGAGCGGGTACCGCACGGCGCGGCAGGGCGGGTTCGAGCGCGATGCCGAGTGGTTCGACCCGGCGGCGCGCGCGTGGCGCCGTCTGGACCGAGTGCGCGCCCCGCCGTCGGCGGCGCACGTGGTGGTCCGCGGCCGCGTGTGGTGCATAGAGGGTGCGGCCGTGATGGAATGGCTCGGGGAGCGCCGCGGCTGGCGCGAGGTGGGGCCCTCCCCGCCTGGTCTCAAGGCTGGCACGGCGCGCGCGGTCTGCGTGGGCGGCGGGGAGCGCGTGGTGCTGACCGGCGCTATCGACGGCGAGGGCGGCGGGCGGCACGCGCTGTGGGTGTTCGACGTCAAGTCGAAGAACTGGACCGTGGTGCGCCCCCCGCCGGAGTTCGCCGGTTTCGTGTTCTCCCTCGCCTCCGTCCGCGTCTGA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000610G0210 gene.
ATAAATACTAATTTTGTCTTTGTTTTCGTTCTTTTGTTTTCTTCCTGTCTTCCATGCTTCCGCCATGATTCACCCGGCGACCTCCCTAGTAGCTCGCCAGGGTCCCTTTCTCTCCCTCTCTATTTCTCTTGGCTTCGCCGCCCAGTCGTGCCGAGCTCTTTTCTCCGGTCGAAGTTGCGTTGTGCCCCTGTAATATCTGATTTAACTAAATAAGTAATCAACAAATTAATGGTAATAATCAAAAGCTAATTGAAAAATTTAGAGAATTTAGTTGGAGAAGTAGGCTTTTGGTCCATGGCCTAAAAGGGGGATTCAATCACTTAAGGGGTCAAAGGGGCTAGCAACCCCAAACCCTAGCCCCCTGGTACTGTAGTGCCGTCTACTGTAGTACCTGGTCTCCTCCCCTCCCCATTGCAGCCACCACCTCCCCTCACCCGTGTGCCTCCTCCTCCCCATCATTTTTTGGCCACCACTTCTTCCCCCTTGGCCGTCCCTTCCCTATCTGTCTAGCACGTCCCCCACATCTCCTCTTCTCTCCTCCCCTGGTGGTGCCTCCCCTCCTCCTTGGGATGCCTCCCTGCTGCCGGCCAAGGGAAAGATCGGGAATCGCTGTTTTGGGTGTTGCTGACCAAGGAGAAGAGGGAGAGGGAGAAGAAGAGGGGAAGAAGGAGGATCTTCGCAAGAGGGATTCAACGAAGTCCAGCGGGATTTCGTGGGTAAATTCTTATTCCCCATTGGATTTAGTAGGTGTTTCATATGCGATTCATCGTCATTAGTTAATTCTACAATTGTCTGTTGTAGATCGATCGTTCTGCTGTTCTGTTGACGCGCGATTTTGAGTTAGATCCGAGCAGACCAGCGTTTAGTGCCTCCTAGTCTTATGTGGGGTTTCGCGTGGGCTATCGAGAGAATATTAATTCATAATTTTTGGATGAACGATGAATTAGTTATGAATTTTGCAAGTCTAGGTGCTTATTCAGTCTCTAGATTTGGGTAGCAAG
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Scaffold PH01000610 Download
Protein sequence
Protein sequence
MRRVCRGWSSAAAAPAFALARAAAGANEDLVFLMQFGNPAAGDDGPKDADAPAYGVAVYNVTTGEWRRESAAPPVPMFAQCAAVGSRLAVLGGWDPQTFEPVSDVHVLDAATGAFVLRHKNALKTAEAYDAGADAWDPLPDMSEERDECDGMATVAGDRFLAVSGYRTARQGGFERDAEWFDPAARAWRRLDRVRAPPSAAHVVVRGRVWCIEGAAVMEWLGERRGWREVGPSPPGLKAGTARAVCVGGGERVVLTGAIDGEGGGRHALWVFDVKSKNWTVVRPPPEFAGFVFSLASVRV
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