gene PH01000435G0330
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000435:188629 - 190469(+ stand)   Name
Alternate name Locus tag PH01000435G0330
Length of gene 1841  bp Length of CDS 1470  bp
Product information
Feature type
CDS
Product name
BURP domain containing protein
Alternate name
Molecular weight
(predicted)
52176.4025200001  kDa
Isoeletric point
(predicted)
8.33554458618164
Length
490  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP02647100 PH01000435:189208 C C_A
PH01SNP02647110 PH01000435:189233 A A_G
PH01SNP02647120 PH01000435:189304 T T_C
PH01SNP02647130 PH01000435:189370 C C_T
Ortholog Groups (determined by OrthoMCL algorithm)
(0 result)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os08g38810.1 BURP domain containing protein, expressed 5E-122
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 300 350 400 450 490
Detailed signature matches
    1. SM01045 (BURP)
    2. PF03181 (BURP)
    3. PS51277 (BURP)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31236 (FAMILY N...)
  2. PTHR31236:SF0 (SUBF...)
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 202568 271 484 1.09E-89 pfam03181 BURP cl03923 -
superfamily 243575 271 484 1.09E-89 cl03923 BURP superfamily - -
non-specific 214992 303 482 5.84E-45 smart01045 BURP cl03923 -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000435G0330 gene.
ATTTTGGGCGTCGGAGTTGGGGTTTGGGGATTTGAGAAGTGGGGTTCTCATGTTCTAATATTCCGGATATCCGGACGTGGTATTATCCGGATAATCCGTATTCGTATCTGTATCCGCCGGATAGCATGCCTACCGTATTAGTTTCTGTTTCTGACAAAAAAAAAACGAATCCATTTCCGATCCGAAAACTATCCGAGAAAAATCCGATCTGAGACCATCCGAATCCGTTTTCATCCAGATCAGACGGAAACTATCCGATCCGTTTTCACCCCCTACATCTCCGCAACCAAGAGGCCCATCAGTATTGCAGGTTCGATACCAACTGCGCCATCAGAGTACAAGACAATAGCTGGCACGGCCAACCCAAATAGAAGCCGCCTTGTAACCAAGGATCAATTCTTGCGGGAAACGGCCCGCGTTCCAAGTGCGCATACTTCGTATCTTCAATTAGCTTCAATTGGAGTGAGGCATCTCGCATGTGTGTACCTGAGAATTCCCATGCAAACAAACGTCAAACGGCGCAATATTCCGAACCAATGCGCGCGCAACCGTCGGCAGCCGGCCGGGCGGCCAGCAGGTGATTGATTCCGTGTGACGTCCGGGAGAATCGCGCGCGCGTCGCGCCTTCTTCCCCGCATTCGGTGCGCGCGGCGCGGGTGGCTACAAACAGGCAGGCAGCACGCAACAACGGCAACGGCGTGGACAGCATGGCGGGGCCGTCGCTTGACGCGGCCGTGCCGTGCCATCGCGCGCCACACGCAGATCAGCAAATGTCACGCCCAATATTATATTCTCTCACAGATGTGGTCATACGATCACCCAACTCGCCGGGGAACTTTTCTGTTTTATGTCGCCGTCACTGTTAAGTCCGTACTGTTACTTTGCCCCTGCTGCAAAGTAATAATCCATTATATAGAGCATATGTTACTGTCAATGTTAATCCATTTCTTGTCGACCCGACGACGCCTATAAGTATCGGCCTGGTCGCCTTATTCCCGTTC
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CDS sequence
ATGGCGCGCTTCCTCGTCGCTCTCCTCGCTGCCACCGTGCTTGCGGTTCAGGCTGGACAGCTGAGCTATGCAGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCATGCTGCCGGACTCCCCCTTGCCGGACGCCATCCTCCGACGACTCCGCCCTGACACCCACTTCGTAAGCAAATCCGAGGCCAATGGCGCGGCGCAACCCAACTACCCCTTCAATTACCAAGATTACAAGCGCACGTCCGGTGATTTCGAGTACGACGACTACAAGAAAGACCCGAGCAAACGCGCCGCCGCCGCCAGCGCGGGTGAACCGACGCCTTTCAGTTACGGCTACAAAGGCTCGGGCAAACGCGATGGCACCACCGCCGGAGCGCGAGAGTTCGACTACGACGATTACAATGGCGGGGGGAAGAGCCGTGGCGCCACCGCCGGAGCGCGAGAGTTCGACTACGACGATTACAATGGCGGGGGGAAGAGCCGTGGCGCCACCGCTGGAGCGCGAGATTTCGACTACGAGGACTACAATGGCGCGAGAAAACGCCGTGGCGCCATCGCCGGCGGAGAGGCGGAACCTTTCGGGTACAGCTACAGACGCCGGCAGAAACGTCCCGGCGCTGCTATCGCCGGAGAGCCAGCGCCGTTCAGCTACGACTACAAGGCGCCGAGCAAACTCCTCGGGAGCAACGGTGCGACAGATAAGGCGGCACCTTTCGGGTACGACTACAAGGCGCCGAGCAAAAGCCACGCGGGAAGCGGTGACAGCGACGCGGCGTCGACGGCGCGAGCTGGCGGGGCGGCCACGACGACTGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCTCCGGCGGCGCCCGCGGCGCTCGGGTTCTTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCTCGACGCCGTCGCTGCCGGGCGTCCTCGCTCTGTTCGGCATCGCGCTGGACTCCGTCGTGGCCGCCAGCATGGAGGAGACGCTGCGCACGTGCGAGTCGCCGACCCTCGCCGGGGAGGCCAAGTTCTGCGCGTCGTCGCTGGAGGCCCTGGTGGAGCTCGCCATGGCGACCCTCGGGACCCGCGACGTCAGCGCGGTGACGTCGACGCTGCCCCGCGCCGGCGCGCCGCTGCAGCCGTACACCGTCCGCGCCGTTCGGCCGGTCGAGGGCGCGAGCTTCTTGGCGTGCCACGACGAGGCTTACCCGTACACCGTGTACCGGTGCCACACCACCGGCCCGGCCAGGGCGTACATGATGGAGATGGAGGGCGCGCACGGAGGCTCGGTGACCGTGGCCACCGTGTGCCACACCGACACGTCCCGGTGGAACCCGGAGCACGTCTCCTTCAAGCTCCTCGGCACCAAGCCCGGCGGCGCGCCGGTCTGCCACCTCATGCCGTACGGGCACATAATCTGGGCCAAGAACGTGAAGCGCTCGCCGGCG
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Downstream 1000 bp region from PH01000435G0330 gene.
ACGTCCATGCCCCCCATGAATGTCACCGTGACACTGATTCACTACCATGCCCAGAAATGGCCTTTTCGATTGATCCTGTGTACCAGTATAACAGACAGCAGTTCTGTCCATTGAAGAATTAAGCAAGAGACCTTCATACTACAGACAAGGAAATAAATAACAGTTCCAATCATATTAAAATTTTGTCAAGGAAATAGATAGCACTTCCAATGGTACTAAATTTTGTTAATAACAGATAACGACTATGTCATTTCACAAAATAGAATTCTCACTAAAACAGGTGGCTACCATGCCATTTCAACTCAGATTACAATTTTATCCAATAAGCACAAGAATAGACATATCATTGCTCCTAAACCCTTACAAAGCTGGGTTGCAATGATATCTAGAGTAATTGTAGCAGTTACAAGCTCACAGAAATTGGAATCACGTATCATTGCACCTAAACCCTTACAAAGCTGGGTTGCAATGCAATGATATCTAGAGTAATTGTAGCAGTTACAAGCTCACAGAAATTGGAATTGAAAAAAGATACTACTACATCTACTAGGGGAGATTGCATCCCATCTACTTAAAAACATCTGCAGTTGATCAAAATCACCTCGAACAGTAAACTCTGCATCTCAGGATGAGGTTCGCACGAACAGTTGGGCAATACAAATCCGAATGGCCATGGAATACAGCGATCAATCATCAATCAATCTTTACAGACGAGAAGATATAGTGCACAAAGGTGAATGATGTCAAAAAGCCAATGGTTCCAGTCGCCAGCATAATTGCGAATGCCATGAGGAATGAGTAACCGAGGTAAAGCATCGCAGAGACAGGCCCGCTCAGGCTTCTGAGGTCAAAGACCAAGTAGTTGATGGAGTAGAGGAAGACGTAGAGAGCAACAGTGCCCGAGGCAAAGAAAGCCTTCCACCACCACCTCCAGTCCTCCCCACAGAGATTAATGTATGTCAGGACAACGGACACCTCAGCGCAGACAATCACAAGCAGCA
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Scaffold PH01000435 Download
Protein sequence
Protein sequence
MARFLVALLAATVLAVQAGQLSYAAPSTAEVFWRAMLPDSPLPDAILRRLRPDTHFVSKSEANGAAQPNYPFNYQDYKRTSGDFEYDDYKKDPSKRAAAASAGEPTPFSYGYKGSGKRDGTTAGAREFDYDDYNGGGKSRGATAGAREFDYDDYNGGGKSRGATAGARDFDYEDYNGARKRRGAIAGGEAEPFGYSYRRRQKRPGAAIAGEPAPFSYDYKAPSKLLGSNGATDKAAPFGYDYKAPSKSHAGSGDSDAASTARAGGAATTTVFFHEEAVRVGERLPFYFPPAAPAALGFLPRRVADSIPFSTPSLPGVLALFGIALDSVVAASMEETLRTCESPTLAGEAKFCASSLEALVELAMATLGTRDVSAVTSTLPRAGAPLQPYTVRAVRPVEGASFLACHDEAYPYTVYRCHTTGPARAYMMEMEGAHGGSVTVATVCHTDTSRWNPEHVSFKLLGTKPGGAPVCHLMPYGHIIWAKNVKRSPA
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