gene PH01000386G0490
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000386:285252 - 287062(+ stand)   Name
Alternate name Locus tag PH01000386G0490
Length of gene 1811  bp Length of CDS 678  bp
Product information
Feature type
CDS
Product name
ara54-like RING finger protein
Alternate name
Molecular weight
(predicted)
25241.0030199999  kDa
Isoeletric point
(predicted)
4.62662124633789
Length
225  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_130123 2
Please click OG5_130123 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT1G32340.1
NDR1/HIN1-like 8
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)
1E-41
Best rice hit
(using MSU7)
(0 result)
Gene ID Product description E-value
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 225
Detailed signature matches
    1. SSF54495 (UBC-like)
    1. PS50908 (RWD)
    2. PF05773 (RWD)
    3. SM00591 (RWD)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR11685 (ARIADNE ...)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 214735 7 128 3.25E-05 smart00591 RWD cl02687 -
superfamily 243141 7 128 3.25E-05 cl02687 RWD superfamily - -
non-specific 218742 7 130 8.50E-05 pfam05773 RWD cl02687 -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000386G0490 gene.
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGGGCATCCCCGGCGGCCGCGCGCCCGCGCCGAAGCTCCACGCGAAGGCAGCCCCCGCCACCCCAAACCCTAAGCCCGTCCCCGAGCGCCCCCACGCCGTTGAGGTTCCGGACGCCGGGGCGGGCGCTGCCGCCGAGGCTCTAGAGCGCCTCGACGTCTCCGCCGCCGTTGAGGATGCTCCGGTGGAGCCGCCGCCTCCCGAGCCTGTGGTCCTGCGACGCCGCGGACGCCATCCCAGCCGCCGCTGGAAGCTTCGTCGTCTGGGAGGGCTGCGGTGGGTGGGGGGCGGGAGGAAGAGGCTGTGAGGAGGCTGCAGGAGCTGGTGGGGGTTGGTGGGGAGAAGGTGCAGTTGACCGAGGAGGAGGTGCGCGCCAATGATCAGCGGCAGGAGGACGAGGTGATGCTTTGTTATCTCTCTGTGTTTGACCGATAGATGATCTTGGCTGTTTAGTTAGGGGTACTATCACAGCAGATACGGTCGGATATCATCACTCTCATCCTGTATTCTATTTCATATTTTTTCTCGGAAAGTGGACATCCTAATACTATTCCGTATTTTTTTCTTAAAATCGGATATCTTGTATTCTATTCCGTATTTTTTTCTCGGAATCGAACTATCGATAGTGTCGGATATCTATTTCTCCGTCTCGTATTCGCTTCGTGAGTGTTCGGTCGGTCAGAATCAGACACGGATAAGGTCGGATACCCATTTCTCCGTCTCGTATTCGCTTCGCAAGCCTTCGGTCGGTCAAACGGATATTATCCGCTTCTTTTGCACACGTACGCAAGACATTAGACAGTAGGGTGCAATCAGAGCGAATACGGAGAGACTAATCGCTGAGATATTGAAGGAAAAACAGTCAGTATCCCCTACCTGCTCAGTTGCAGCAATCCACCTATTTGTTATCCTATTCCTAAGTGAAGTTACAACCGACTTTCCTCGTACAACATG
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CDS sequence
ATGGGAGAAAAGATCTGTGCCTTGGAAGCAATTTTTGGAGACAGTGTAGTCATTATCGATAAAAAGGGAGGCCAGCGGTCTTTCCAGGTCCGTGTGCATATTGAGATTCCAGATGGTATAGATGTATTGGCGAGGCTCAATTATGGTGCTGGAACATTAAATTATGATGCAATGGGTGATGGTGATGCCTCTGATGATCTTGTTTACAAGTTTAGAGTTGAGCATTTGCCTCCAATCCTGCTAACATGTCTCCTGCCTTCATCATACCCGAGTCATCACCCTCCCTTTTTCACTATCTCTGCGGAATGGCTGGACAAAGTGATGATTCTGTCATTATGTCACATTCTGGATATGATATGGGAAGAGCAACAGGGCATGGAAGTAACATATCAGTGGGTGCAATGGCTCCAGAGCTCTTCCCTTTCTCACTTAGGGTTTGATAATGAGATAGTTTTAAGCAAGGGTGATGTAATGTGTGATGAAGATGGTGGAGATCAGCGTGCTTGTCCAGATAATGCTGCACCAGATGTTATAATTCCAAGGATGATGAGATACAATGATGAGAAGCGTCATGAAGCCTTTTTACATGCTATCCATGACTGTATGATTTGTTTCAGCCAACTTCCTGGTAACTCTCTCACCTTTCCCATTTCTGCAGAACTGTCTCTAGTGTTATAG
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Downstream 1000 bp region from PH01000386G0490 gene.
ATTAATGCTGCTCTATTTCTAACTCTAATTTTGTTACCTCATCAGGTGTTGATTTCATCAGACTTCCATGCCATCATTTCTTTTGCTGGAAATGCATGCAAACATATTGCAAAATGCATGTCAAGGAAGGAACTGTAGTGAAGTTGCTATGTCCTGATACAAAATGTGGTGGTGTTTTCCCACCTAATATATTGAAAAGGCTGTTGGGGGAGGACGAATTTGAACGTTGGGAAGGATTGCTACTTCAGAGAACTCTTGACGCCATGAGTGATGTAGTTTATTGTCCAAGATGCGAAACTGCTTGCTTGGATGATGTAGATAATGAAGCAGTGTGTTCAAGTTGTTTATTCAGCTTCTGCACGCTTTGTAGAGATCGCCGTCATGTTGGGGAGCAATGTTTGTCTGCAGAAGAAAAACTTCTTATCTTGGAGGTAGGAACTGCATCCCACATATATTCAGCTTATATTGGATCTGGTTTAATTATGGGGCTGTTATGACGAAAATATACATATTTCCCAAAACCAATATATTTCCACTAGCAAATAGAAAATGAGAAATACTAGAAAATGGATACCATATTCTAGGATCCAATGGTACAGTGGCGGCTTTTTATGAATGCATGGACACCGGTGTGGAAAACATAAAGATGGTTTACATTGCTTTCACCTTAAGTGGAAATATATTGGACGAGATGTGTCTTGCCATAAAAGCTCATCACTAGTCAAGTGGCTTTCAGGCATTCAGGCATTCAGCCCAATATGGGAGAGTGATGGATGCGGTTCCTCATCACAAGGATTGCATTAATTTAGTGGCTTTCACCCTGTTACAGATATATGCTAGTACGATATTTGCAAATGCATGTGCATCATCAAAAGGCACACATGCATTGCAACAGCACAATTATCTCTAGTGAACACATCACTAGATAATCTCATAGAAATTGCTATTTGGTTACTTGCCTCATGGCCTCAATGACCTTTGGCCAAGGGTGGATATATCAT
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Scaffold PH01000386 Download
Protein sequence
Protein sequence
MGEKICALEAIFGDSVVIIDKKGGQRSFQVRVHIEIPDGIDVLARLNYGAGTLNYDAMGDGDASDDLVYKFRVEHLPPILLTCLLPSSYPSHHPPFFTISAEWLDKVMILSLCHILDMIWEEQQGMEVTYQWVQWLQSSSLSHLGFDNEIVLSKGDVMCDEDGGDQRACPDNAAPDVIIPRMMRYNDEKRHEAFLHAIHDCMICFSQLPGNSLTFPISAELSLVL
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