gene PH01000183G1320
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000183:902050 - 907682(- stand)   Name
Alternate name Locus tag PH01000183G1320
Length of gene 5633  bp Length of CDS 954  bp
Product information
Feature type
CDS
Product name
No apical meristem protein
Alternate name
Molecular weight
(predicted)
34867.95292  kDa
Isoeletric point
(predicted)
9.17502975463867
Length
318  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
(0 result)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT1G56010.2
NAC domain containing protein 1
Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)
NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G
2E-78
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os12g41680.1 No apical meristem protein, putative, expressed 4E-142
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 318
Detailed signature matches
    1. SSF101941 (NAC domain)
    2. PS51005 (NAC)
    3. PF02365 (NAM)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31427 (FAMILY N...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003677 DNA binding

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 216997 13 143 1.13E-71 pfam02365 NAM cl03558 -
superfamily 216997 13 143 1.13E-71 cl03558 NAM superfamily - -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000183G1320 gene.
ACATGCAACTAGCTAGGAATTATTAAGTGATGACCATTGGTTCAACACATCAACCTAACAATCTATGAAAATCACAGCCTAGATATGTTCATATGTTGACCTGAAGAAAATAAAAGGCCAATAGGGCATGCATGTAAGCAAATCTAGAACACAATCATACAGTTGGGATAACAAATTGTGTGTAAAGTGTAAGCATAAGACCAGAGAGGACTGGAATATGTCAGTATCTAGCAGCTGCCACCTTGATGCAAGTACACCTTGGAGTTTCTTTTCTGCTCTTTACTCTTCCACATTATTACAAGGCGACCAAGAGAGGTGTACAAGACTTGTAGCTCTACGTATACGAGTACTAGTATTGATGGCATCAGGTACAGCAAAAGTGATCAAGGCCTCTTTCTGAAAGGTGCAATGAAATAGAAAGGTGGTCACTCATGCAGTTGGCCAGCATATCAGAAATAGTGCAGTGAATAGCCTGGGCCTTTCAACTTACTGTTCATTAATTTGTATGTTTGACATGGCAATAGTATAGGAGAAAAGAGTGCTTTGGATGTGAATCATATGCATATATACTTTTCTGAATGAATATCATGATTGAGCCGGTGCTGCATCTGGCAAGTTGTGCAATTCTGAATTATTGTACAAGCTCCATTGCTGTTGCTATGCATGTAGGCTAATTTGTGGAATCAGTTGAACTCAAGTATACCAAAAGAGAGAGAGAGAGAGGAGGAAGAAGATGTGATCTGTGATTTGACTTCTTTGTTCTTGTAACTGTGAGCAGCATGTTGGTGAGGCTATTTGAGGATGCTTTTAGTAATTCAAGTTGCCTCTGCTCTATCCATACAATTAACATGGCTTTTCAGGTTAATTATATCTTACATCCCCTTCTAAACTATAGTCACTTTGAAGTTTGAAGCGTCCTCATTTGGATTAAATGACAGGATGCAACATTCCACATATAAATATGCGACGATGAAGGAGAGAGCAAGGTAGACAGACCCAAA
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CDS sequence
ATGTCCATGAGCTTCCTGAGCATGGTGGAGGCGGAGTTGCCTCCGGGGTTCCGGTTCCACCCGAGGGACGACGAGCTCATCTGCGACTACCTCGTGCCCAAGGTCAGCGGCAAGGCCGGCTTCTCCGCCCGCCGCCCGCCCATGGTCGACGTCGATCTCAACAGGGTTGAGCCATGGGATCTCCCCGCGGTGGCGTCGGTAGGGGGCAAGGAGGAGTGGTACTTCTTCAGCTTGAGGGATCGGAAATATGCGACTGGGCAGCGCACGAACCGGGCGACGGTGTCGGGGTACTGGAAGGCGACCGGGAAGGACCGGGTGGTGGCGCGGCGGAGGGCGCTGGTGGGGATGAGGAAGACGCTGGTGTTCTACCAGGGGAGGGCCCCCAAGGGGAAAAAGACGGAGTGGGTGATGCATGAGTACAGGTTGGAGGGTGCACATGAGCAAGCCTCCAGGTTCACCTCCAAGGAAGATTGGGTCCTGTGCAGAGTCATCTGCAAGAAGAAATCAGGAGGAGGAGGTGCCACCTCCAGGCCAAGAAACCTCACCACCATTGGCCATGACACATCCACAGCCACCTCCTCACCACCATTGCCACCTCTCACGGACACCACCCTAGCACAACTCCAGGCCACCATGAACACCACCACCACCACCTCCGCCGCCGCACTTGAGCAAGTGCCCTGCTTCTCCAGCTTCAATAATAATATTGCCAGCTACAACAACAGTGCTACTGTTGTACAGCCATGTTACCTCCCCATGGTCACAGGCAGCAATGGCTTGAACTACCTGGATGGTCTGCCTGACTTTGGCAGCTTCTTGGACCCTGCTCTGAACTGTGACAAGAAGATGCTCAAGGCAGTGCTGAGCCAACTGAGCTCCATGGGGGGTGAGGTGATGCCAAGCCTGCTTCCTGATATGGCTGCTGCTGTGAGCTCTACTGGGATGAATCACTTC
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Downstream 1000 bp region from PH01000183G1320 gene.
GTCATGCGTTACAACTTGTGAAGAGGGGTTTATAAGGTGGTTTAGGTAGTGGGTCTACCTCAAGCTTTTTTTTTTCTCTCTTGTCCTTTTTTTTTCTTTCTTTATTTTCCTTTTATTCCCTTTTTGCCTTTTCTTTTCACAAATAGGAGGAGCACTTACACGAGAACATAGGAGACTTGTAGAGGCAACAGGCACAAGCTCCTCATATGCCGGCCAGTAAAAAGAAAAGAAAAGAAAATTAAAGAGAAAATGGAATTGAAAAGCTGGATTGCTATCTACCATCAAGAACAACCAAGTGCTCCACTTGTCAGCTAAGGTGTAGCTGGCCTAGCTAGTCCTTTAAGTCAAATGTGAAATACTACTACTTTTGAAAGGACAAGAAAAATTCTAGGTCAATCTTGTGGATAAAAAGAGTAGCCTAGGCCTAGCTAGTTTGTTGTTCTTGGAGGAAGTACAAAGTACAAAATAAACACCTACCCTTTTGCATTTTTTTTTAAACTCTAGCGATATGCAAAAATACAGCTTCTATAATAAGTAGCATGTACAACACTATAAATAATTAATTCTGCAATTTCGATCTAAAATGATATGATATGTTGAAGATGTACCTAGTGCAAACTTGTGCTTAGATGCAGACATGCAAACTACCTAATCTGAGGACTTATCTTGATATATATATATATATATATATATAGATGGGAATAAAAACTCTAGTCAGTGCATTTGTTAGAGGAAAACTATTTTAACTATTATTGTATAATAGTAATAATATTGTGCTACAACTCCTCTGCCCAATTACGCAGAATTGAGTAGTACTATCATCAGCTAATTCTCAGGATGACTTAAGCTTAGCAGTTTGCAATTAAGACCATCTATCTTCTTTGACTGTCATTTCTGCTCTCCACTTCGTGCTAAAGCTGCCTAGGAGTTTAGTGAGTCCACATCTTCGGCTCACTGCGTAAATTAATTAAGTCCAGTGTTGACAATTGACTGGGGGAGAA
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Scaffold PH01000183 Download
Protein sequence
Protein sequence
MSMSFLSMVEAELPPGFRFHPRDDELICDYLVPKVSGKAGFSARRPPMVDVDLNRVEPWDLPAVASVGGKEEWYFFSLRDRKYATGQRTNRATVSGYWKATGKDRVVARRRALVGMRKTLVFYQGRAPKGKKTEWVMHEYRLEGAHEQASRFTSKEDWVLCRVICKKKSGGGGATSRPRNLTTIGHDTSTATSSPPLPPLTDTTLAQLQATMNTTTTTSAAALEQVPCFSSFNNNIASYNNSATVVQPCYLPMVTGSNGLNYLDGLPDFGSFLDPALNCDKKMLKAVLSQLSSMGGEVMPSLLPDMAAAVSSTGMNHF
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