gene PH01000169G1430
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000169:972410 - 976273(- stand)   Name
Alternate name Locus tag PH01000169G1430
Length of gene 3864  bp Length of CDS 954  bp
Product information
Feature type
CDS
Product name
AP2 domain containing protein
Alternate name
Molecular weight
(predicted)
34267.29432  kDa
Isoeletric point
(predicted)
6.02809524536132
Length
317  aa
Expression profiles
Expression status (Yes/No)
No
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_135471 4
Please click OG5_135471 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os06g43220.1 AP2 domain containing protein, expressed 1E-70
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 317
Detailed signature matches
    1. SSF54171 (DNA-bindi...)
    1. SM00380 (AP2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR32467 (FAMILY N...)
  2. PTHR32467:SF0 (SUBF...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 237985 149 194 3.22E-11 cd00018 AP2 cl00033 -
superfamily 241562 149 194 3.22E-11 cl00033 AP2 superfamily - -
non-specific 197689 150 198 4.06E-14 smart00380 AP2 cl00033 -
non-specific 197689 96 120 0.000183279 smart00380 AP2 cl00033 N
superfamily 241562 96 120 0.000183279 cl00033 AP2 superfamily - N
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific DNA binding site R152,G153,T155,H157,C159,K161,R165,D167 11 8 237985
 
DNA sequence
Upstream 1000 bp region from PH01000169G1430 gene.
CTCATGGGAGGTCTCAACGGCTGGGATGAAATCAAGAGAGCTTTAACGATTAAGATCAAGGTGAAGGGAGGTCCTGATGTTTAAGATTAGAACAAAGAGTTCCCGAATGGTTCAGATCCACATAAGGGAGGTCTGAACGGAGGAGATCCAAAGGACGAAGTCCAGTCGAGAAGATCTGCTGGTCAAGATCCGCAGAAGGAGGTCTTGATGTTCCAGATCAAAAGGAGGAGGTCAGGTGGGCTAAGATCTCCAAAGGGGAGATCCAGGCGAAGGGATTTCAAAGGAAAAAGGATTCTGGCGGAGGGGATCCACAGAAAGTGGTCCGACCCAGATTCCAGCGGTCAGGATATCTCAAAGGTGACCTCGTTAGTCAAGAGGAGATCAGAGGAGGTCTTGGCGGTCAGGATGGTCCCAAAAGAGATCCTGGCGGCCAAGGGGAAGTGCCAAGGGGTTCAAGTGAACACAGAAGGTTCGAAGGCACACAAGAGATCCAATGGAATACAAGGAGGTCCCAACAGAAAAGAGGTCTGGGCATAAGAGAGTGCCCAGGCAACAAGGGGGTCTAGACTTAGAAAAAGTCTGGACAGGAAGGAGGTCTGAACCAAAGAGATTCAAACCAACAAAGAGATCCAAAGTGATCCAAACCAAAGGGGAAGGTCTGGACACACAGAGGGTCTGAACAGAAAAGAGATCTAGACTTAGAGAATACCCAAATAAAAAGGGAAGATAACTCCAGAGAGCTAGAGCAAAACCAAGAGAATCAAGCTTTAGATTAGTTGAAGTTTAGTTTAATCATTTTAAACGCTTCAAATTCTGAAATTCTCAGGTTAAGCTTTGAATTCTCATCAAAACCAAATGGTTCTTTTTATTTTGAAAATTTTTAAAAAGGTTCTGAAAATCAGGGTGTTACACGATCACCTCGTAGAGGAAGGATAATCACACATACAGAATACAGAAAATAAAAATTGACACACAAAGAGATGAGAGACTTCTTTCTTCTC
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGGCGGCCACCAAGAGAGTCTTCTACGGCGCCGGCGGCATTGCACTCGCCATGCACAGAGACGACGCCGTGGTGGAGGAGGCGGAGCTTCGGGGCCAGGTGGAGGAAGGTTCAAGTAGGATCTTTGGGTTCCCTGTGCTGGCTGGGGGTCCTGCCACTCGGCAGGTCGTCACCCAGCAGTTCTTTCCGACGACGGTCGTCACCCAGCAGTTCTTTCCGACGACGACGGTGGCGGCGGCTGCGGAAACGCAGCAGCAGGGATTGTGGAAAGCAAGTGTACTTGGGGCCTATGACCAAGCTGCAATCAAGTTTCGTGGTGTGGATGCAGACATAAACTTCACCCTGGATGACTACAAGGAGGACATAAAGAAGATGAACAACTTCAGCAAGGAGGAGTTCGTTCAGGTTCTCCGGCGACAGGGCACCGGCTTTGTTAGGGGGAGCTCGAGATTCCGGGGGGTCACCCTGCACAAGTGCGGCAAATGGGAGGCCAGGATCGACCAGCTCATGGGCAAGAAGGCTTATGACAAGGCTGCGATCAAGTGCTGTGGCAAGGAGGCAGTGACCAACTTCGACCCCCAGACGTACGAGAGCGAGCTGAACCTGCAATCTTGGGACAGTGAGCTTGATCTTGAGCTCAGCCTGGGCTGCTCAGGCCGCGAAAGGGCCGGCGATCCTACCACCGTCAGCGACAACATCCTCCATGGCACACCGAGCAACCAGAGAACGAGACTGACGGACCAGATCAGCAGCAGTGGAGGCAGGGAGGGAGCAGCAGCTGCAGGAGCAGGGGCGAACGGTGCAGAGCTACAGATGCGCCCGCGCCCTGGCTGGCCCAACGGCAGCAACAATTGGCGGCCCTACGCCGCCCGGTCCCGGCTGCCCGTGCCCGACGACGACGCCAACGCCGCTGCAGCATCATCAGGATTCCCAGTGGAGCTGGGCAGCTGCTGA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000169G1430 gene.
GGGCTTCTCACCTAATCATCATCCCTCCTTTTTATGTCTCTTCATGGGTACACATTTACTTAGATATGCCCACAAGATCACAATCACATGTAGCATAGTTGTGTATGACTTCACATTTAGCATTGTTGTGTATGACCATCTACCTGCCATTACACTACTACAGAAAAAGTCTTTACAGACGGCTCAAAAACGTTATCGCTGACGGTTTTGTGAGCCAAGATCTTGGCCGCTATTCCGAATTAATCTACTAATCCGAAGCCAATGAAAATAAGCAGGACCCCCAAAAAATTGGGGGTTTTGTCTGTAGTGGCCCAAACGGCTACCAATAAGGATGAGGTCGCGTTTCCTTATTCTTTTATTAATTTTAATTGATTCGATTCGAGAATTCTGAGTTTATGGGTCGGTTTTTGAATCGTCCGTGAAAAAACTATCACAGACGGTTTTGAACAAGAACCGTCTGTGATAATTACTTACCGTCTATGATAGTTTATTTTCACAGACGGTTCTGAACAAGAATCATCTGTGATAAGTAATTATCACAGACGGTTCTTATTAAGAACCGTCTCTGATAGTTTTTTCTATTAAAAAAATCGGATTTTGAGCCAAACCAATCAATTGCTAGACAGTAGTTTCCATATGCAACCTCTAGCAAGACAACTAAAATCCAATTAAAATTCTGATGGCAAACACATTATAGGAAAGGGAAACCAAAAGGTTTCACAACGTCCCCTCCGAATGGGAAAAAAGAATAAAATTACAAAGTTAAACTAGCTAGAAACCATCTATGCCTCCAAGCTCCTGAAGAACTCGTCGGCTTCTTAGATTGGTCTTGTGAGCTCCTCTCTGTACCTCACCAGCATATCACAAGATGTTCTTGCATGTCGTCGAGTTCGACTCAAGCTCGTCGGCAAGGAGAGACGACTGAAAACCTCCAGCGGCGCTCCGACTTTAGGTAACACAAAATTAAGATAATTTTCTTTACAACAAACAGCCAACAAATT
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Scaffold PH01000169 Download
Protein sequence
Protein sequence
MAATKRVFYGAGGIALAMHRDDAVVEEAELRGQVEEGSSRIFGFPVLAGGPATRQVVTQQFFPTTVVTQQFFPTTTVAAAAETQQQGLWKASVLGAYDQAAIKFRGVDADINFTLDDYKEDIKKMNNFSKEEFVQVLRRQGTGFVRGSSRFRGVTLHKCGKWEARIDQLMGKKAYDKAAIKCCGKEAVTNFDPQTYESELNLQSWDSELDLELSLGCSGRERAGDPTTVSDNILHGTPSNQRTRLTDQISSSGGREGAAAAGAGANGAELQMRPRPGWPNGSNNWRPYAARSRLPVPDDDANAAAASSGFPVELGSC
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BLAST search against this genome or other genomes in database  
 

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