gene PH01000129G0360
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000129:246085 - 247451(+ stand)   Name
Alternate name Locus tag PH01000129G0360
Length of gene 1367  bp Length of CDS 864  bp
Product information
Feature type
CDS
Product name
ethylene-responsive transcription factor
Alternate name
Molecular weight
(predicted)
31137.9823199999  kDa
Isoeletric point
(predicted)
5.7101707458496
Length
287  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP00975670 PH01000129:246856 C C_T
PH01SNP00975680 PH01000129:246872 C C_T
PH01SNP00975690 PH01000129:246884 A A_G
PH01SNP00975700 PH01000129:246904 G G_A
PH01SNP00975710 PH01000129:246930 G G_C
PH01SNP00975720 PH01000129:246948 A A_G
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_137071 14
Please click OG5_137071 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
Gene ID Short description Curator summary Computational description E-value
AT1G78080.1
related to AP2 4
Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-bind
4E-44
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os03g09170.1 ethylene-responsive transcription factor, putative, expressed 8E-97
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 287
Detailed signature matches
    1. SSF54171 (DNA-bindi...)
    1. PF00847 (AP2)
    2. PR00367 (ETHRSPELEMNT)
    3. SM00380 (AP2)
    4. PS51032 (AP2_ERF)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31657 (FAMILY N...)
  2. PTHR31657:SF0 (SUBF...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 237985 112 172 1.62E-21 cd00018 AP2 cl00033 -
superfamily 241562 112 172 1.62E-21 cl00033 AP2 superfamily - -
non-specific 197689 114 173 1.36E-23 smart00380 AP2 cl00033 -
non-specific 216148 114 145 3.60E-08 pfam00847 AP2 cl00033 C
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific DNA binding site R115,G116,R118,R120,W122,K124,E128,R130,R137,W139,T142 11 11 237985
 
DNA sequence
Upstream 1000 bp region from PH01000129G0360 gene.
ACAGCTGCGTGCCCTCAACTCATAATGAATGACCTTTCTTTACGTCACCATCGTATCTAGTATGCATACTAGACCAATGTAAAGAAGTTCATATAACGCCTCCAATTTTGCTCGAAAGTTCATCCACCATCTCGAACTAGGAAATCAGATATTTTGCTCATTCAAACTTTGTAATCCGGTTCAAATAACATCTCGACCCGGTTTCACAGGATGTATTATTCGTGTCGCGTGATGAGTGGACGATTTTGTTACGTATGATGATACACTTACCAAGTTTAAATGAATGATAGGTAAGACCCACATAGGTTTCTCCCAAATTGAAACAGAGAGAGGAAGCTATAGGGGCAGCGGCTGTCGAATCACAATTGGGAGCTCAGTGGGGGAGAAGCCCTGCGGGCCTCACCTGTCATTGATCTAACATGGTCGGTGTGCCATTCTATATAGTAAAACCGCTCACTCATTTTGTCAAGTGTGCAATATCACAATATAAAACCGAGTTATGGTATTATTTGAACTGAATTACAAAATTCAGCGGTCAGTCTGGTTTCGTAGCTCAGGTTTGATAGACTTTCAAATAAAGTTGGGATGTTACATAGTTTTTTTTCCGTACTACTACTGCTCAATATTGTATTGTCATACATGATCTACCTCTCCGATGCTGCTTTTGCAAAATCCAGGATTTGATTGGCTGGAGAAAGAGTAGTTTAAGCATAACCATCTGCTTCGCTACGGCGAGGAGAGACCACTACTCGACTCGGAGACCGCAGCACCCCGCCCGGCCGCATAGATCACGCTTACTCGACGACAGTCATGTGACAGCTAGATCTGGATTTACCAGGTCAAAACCACTTCTTGGCCAATCACCAGCCGCCAGGTGCCCATCACTTTACCGGCAGCTGCCTAGTTCAGTTGTCCCTGAGTGGAAACGCCTCGACAGGTGGCGGTAAGAAATCACCGTGGACACCTGGCGCCTTCTCATTGGCTAGCACTACTCCGCGCGT
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CDS sequence
ATGGCGACGACGATAGATTGGCACGGTTGCAACACCAATATTCCCGCCGCTCTGTATGGCATGGTGGACAGAAAGGAGGTAAGGCAAGCGCTTGCTCCGCCCATGGTGCAAGATGCACGGACCATCTCCTTCTCCTACCCCTGCTCCGGCGTGGAGCAGAGCGCGGGCTTGCTTCTTGGCGCCAACTACCAGCTGACTCCCGCGCAGATCCTTCAAGTACAGTCGCAGATCCACCACCTGCGCCGACCGGGCGAGGCCCTGGCCGCGGTGGCGCAGCCAATGAAGCGGCATGGCTTCACGGCGGCTGCGGCGCTCCCAGCGCGGCCGGCGGCCAAGCTGTATCGCGGCGTCCGGCAGCGGCATTGGGGGAAGTGGGTGGCCGAGATCCGCCTGCCCCGCAACCGCACTCGCCTGTGGCTCGGGACCTTCGACACAGCCGAGGAGGCCGCGCTGGCCTACGACAGCGCCGCGTTCCGCCTCCGCGGCGACTCCGCCAGGCTCAACTTCCCCGAGCTCAGTCGCGGCGGCGAGCACCTCGGCCCGCCGCTCCACGCCGCGGTCGACGCCAAGCTCCACGCCATCTGCCACGGGATGGACCTGCCGCAGCAGAGCCAGAGCACCACGACAGCGGCAGCGCCGAGTTCTTTCTCCTCCGAGAGCCCGGACGTCAAGAGCGAGCCGGGCTGCTCCGGCTCCGAGAGCTCGTCGTCGGCGGACGGCGACGTGTCCTCAACGGACTCCTCCGATGTAGTCCCGGAGATGCAGCTCCTTGACTTCTCAGAGGCGCCATGGGACGAGTCCGAGAGCTTCCTGCTGCGCAAGTACCCGTCGCTGGAGATCGACTGGGACGCGATCCTTTCCTGA
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Downstream 1000 bp region from PH01000129G0360 gene.
ATAAAGAACCAGCTTATCACATTCAAATGGTTTTTGATACATCTGTTACTGTTCAGAATAGCATAGCAGAAATGTGATGGAATTTTAAATATGTTAGATGAGCTTATAAGACGAACAAAACAATAGTTGGCTTAAAATTATGCAAGTTTGTTCCTAAATGTAGAACATACCAAATAAAAGGAAGAACAAAATATATGTGGGATCTTTAGCAATAAGGGAACGCATAACCCGTTATCATGCAGAATTGTTCAACAAGTATCAGCGTGATGAAATTATATCCCAGCATTTGACTGCAAAGCTGTCAATTGCATTTTAGTACAAAGTTACTTGATTTATCTCATGAGAATTAGATGACGCAGTTCCTTTCCTGCAAAAAAAAGTTTGATGTTCTTGCGCAAATCTGAATTTCTCATACATGCTTGATATCAGTGGTGTCAAAATCGAATCCATTTCGACAAATTCCAGTGCATGTCAAAAATTCATATGATGTTATACCTGTCGACTTGTCTGGTTGGATGTGCGTCCACTGTAGCTCTATAAACTAGTTTGACTTTTAGGCTTGCATTTTCTCCACATTCTTTAGAGAAAAAGAATATCAAAATCACTTCAAAAAAGGGAGAAAAATTGAGAGAAGAAATAAAGTCTGAAATTGTTAATTCAATACGAAACAACTAATCTGAAAGCTGATGTGTCCATCTAATCTTCACATTTATCGTGTACCGGTCATTGCAACACATACACTTAACTTATTTTGAACAGTACTAAATAATCATTTGTGGCTGCAGATGAGGGAAAGCATCTGGATCTCTGTTTTGCGTATTCTTTGTTCAGAAGGACCAGAGAGCCATGTGGGGAAGTCAGGACTCCACGTTATCAGTACTTTGCTTTGGCTTAATATAATGCTAATCCAATTCCTCAATAGGAGAGATAAACTGGGTTGTTATTAGCTGCCAAGAACCACAGTAGACATGATTTTTCCTAGTTCATTGTACATTGTTCAG
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Scaffold PH01000129 Download
Protein sequence
Protein sequence
MATTIDWHGCNTNIPAALYGMVDRKEVRQALAPPMVQDARTISFSYPCSGVEQSAGLLLGANYQLTPAQILQVQSQIHHLRRPGEALAAVAQPMKRHGFTAAAALPARPAAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDSAAFRLRGDSARLNFPELSRGGEHLGPPLHAAVDAKLHAICHGMDLPQQSQSTTTAAAPSSFSSESPDVKSEPGCSGSESSSSADGDVSSTDSSDVVPEMQLLDFSEAPWDESESFLLRKYPSLEIDWDAILS
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