gene PH01000053G1650
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000053:992990 - 995220(- stand)   Name
Alternate name Locus tag PH01000053G1650
Length of gene 2231  bp Length of CDS 1086  bp
Product information
Feature type
CDS
Product name
NAC domain transcription factor
Alternate name
Molecular weight
(predicted)
40386.49812  kDa
Isoeletric point
(predicted)
6.3188362121582
Length
361  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_243148 3
Please click OG5_243148 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os11g03300.1 NAC domain transcription factor, putative, expressed 2E-146
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 300 361
Detailed signature matches
    1. SSF101941 (NAC domain)
    2. PS51005 (NAC)
    3. PF02365 (NAM)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31719 (FAMILY N...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0003677 DNA binding

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 216997 9 137 2.65E-77 pfam02365 NAM cl03558 -
superfamily 216997 9 137 2.65E-77 cl03558 NAM superfamily - -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000053G1650 gene.
AGCAGTGAGCAGCCAAGAGAGTAGGGGACATTTTTAATTGATTGGGCCTCCAACAAGCAACAAAACATCAGCCTACCAAGGTATTACACGGTCAGTAAAGAGCCCACTGCCTACACTTCTCATTCTCAATCTTCTTCCTCCGGACGCTGAGCTGCTCGATTTCTACCGGTCATATGCCGCCTACACACCCAAAATTCAAGTGTCCGTGCCTGGGATACGTGGGGTCCAGTGGCCGAAGGTGGGGCTAGAGCCCAAGTAGCCCCAACACTGCCTCCGCCCCTGATCCTATCCAGGGCTTAAACTAAGAGCTGAAGCACCAATTATAACCAGTCTCTGTAACATGTGACCTCATGCTTGCTTTAGCTAGTTAATTTCTTGGAGATTGCTTCGGACCATTGGGGTGGTGGATCGAGGTTAGACCAGATCGAAATGGTTAGTTGCATTTCTCTGCATTATCTTCTTGTCATGCATGGTACGATGGTTTGAAAGAGCTAGCTAGAAGCATAATTAAGAAATCGCTGTCTCCAATGAGGAAACTTCCTTAACCAAATGGGGGAGAATAAACTAATAAGGACCTATCTAATTGAACATGTCCTACGTGCATCATCATGGACCATGCATCCATGTATGTTGATCAAGTAGCTAACTGAGCAAACGTGCATCGCCGTCGTCTCTTTCCACTGTCCTGCAACGAATATAGTATCATCAATTGTTTCGGCTGGTGACGGCGCTTAGCCATTGTATTGGTCCACCGACGCATGGATATATATGTAGCCGGACATGTAGGGAAAAAAGCTTGTTAGTGCAGGCCGTCGGCTCGATCGGTTCAAAATTACTCTAATTACACTCATTAATTGGTTAAACATTGATTTGAAATGAAATTGAATTTGGTCTGACTCGGCTCGGCTCGTTAGCTCGGTCGTAACCTGACTCGATATCCACCCATGCATGCTTCAATATTCAAATGTTGAATTAAGGACAGATTAATCGAGCATTGATTT
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CDS sequence
ATGCCGAGCACTAGCATGCCTCCTCTTCCGGCTGGTTTCCGGTTCCACCCGACAGACGAGGAGCTGATTGTTCACTACCTCATGAACCAGGCTGCCTCCATGGCATGCCCTGTGCCTATCATTGCTGAGGTCAACATCTACAAGTGCAACCCATGGGATCTCCCTGCCAAAGCTCTGTTCGGAGAAGACGAGTGGTACTTCTTCAGTCCGAGGGACCGCAAGTACCCAAACGGCGCCCGTCCCAACCGGGCTGCTGGATCGGGCTACTGGAAGGCCACCGGCACTGACAAGCCCGTCTTATCAACTCCGACGAGTGAGAACATCGGAGTCAAGAAGGCCCTTGTGTTCTACAGGGGTAAACCTCCAAAGGGTGTCAAAACAGATTGGATCATGCATGAGTACCTCCTCACAGCGACGACTGGCAAGAGCAAGCAGCGTACAGGATCCTCCATGAGGTTGGACGACTGGGTGCTGTGTAGAATCTACAAGAAGAGCAACAACTTCCAGCAGTTCTCATCTGATTACCAAGAGCAGGAGGACGGCTCGACTGTGGAGGAAGATTCTGTCACAATCAATGAAACCTCGCCAAATTCTGAAGCTCCTGCTGGTGATGATCAGTTCCGTCCCATGACCATCAGCAAGTCATGCTCCCTCACCGATCTCCTCAGCACCATCACCATGGACTACTCCGCGCTCTCGCAGCTGCTCCTCGACGGCCCCCCAGAGCCGATGCAGAGCCCCCTGATCTACGCAACACCTCCATGCCAAACACTTAACTATAACAACAACGTGAACAACCACATTAGCTTGCCACAAGTAGACGCATGTTCATATTACAGTGCCAATTATAATGGTATGAAAAGGAAGAGAGTAGTGACAGATAGTGCTAGATTCTTAGAAGATGGCGGCAGTATTACGAAAAAACCGCCACTGCAGAGTAATTCAAGGATCAGCAATTTTGGCAGCACAAGCAGCTACTGCAACCAGCAGCTTGCAGATCAGAGTAGCTTTCAGTACAGCAGCCTGCTGAGCCATCCATTCATGAACCAGCAGCTGCTACTGAACAGCCACCCGCAGATGCAGTAG
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000053G1650 gene.
GAGATGGGGGGATTGGGGCTTGGATTTATAGATGCCATGTCTTTGTCTTGTACCTAAGAGAAGGCTTTGGTGGGTGGATTAGTCTGACGATCGAGGGCACAGTAGACAACTAGTATTAGCATATGTCGTCAGGGGCAATGACTCAAACAACAGCTGCAAGGTCAATTCACTGGAACTCAACAGCGGACTGAAGAAGCAAGCCATCGCTAAACAAATGACTAATTTGCCCTTGGACGTAGTGATCGGCGTGGCTCCACGTAAGGCACTCGTGCGCACGAGTGGACGAATTCCGCGTGAGGGGATAGCGAACGCGACGGGAACGGTCTGACAAGATGATCCACTGCGCCACGTGTCGACCTATCGTCAGCGCCAATGATATGTGATGCTTTTCGCGGCTGCTCCTCGATGATATTGTGAATATTGTATAGCAAGCAGGAAAAGCACATGTCATCCGCACCGCCAAATTCTTCTTGTTTGTAGACTTCCCTCTGCTGTAACCTTTTTTTTTTCTACTTCTGTTAACTACGATGTAAAACGTCAAATTAAAGTAAAAATGACGCAGTCATGGACATCAATTATCATGTAACATGTCTGTGTTGTTATACCATGCTCGAGATTGCAGATGCAAGAGGGGAAATAGGAGCGAGGAGACAGAAGATGTGGTATTTTCAAATTTTAATCACTGACATGGCATGGCATGCATGCTACTAGTAGTATATATATTAAGGACTACTCTCTCCGTTTTTAAATACATGACGTTTGACCAAGCGTGCAGTCAAACTTATATAATTTTGACCATTACTTTTCATATGATTTTGTTAGTAAAAAATTACAAAATTATTATATTATAAAAATATTTATTATGACAAATCTAATGATACTATTCACTCATGATCAATCTAAATAGTTTTTCATATATTATTAGTTAAAGTTAGATAGATTTGACTGCACGCTTCGTCAACCGTCATGTATTTAAAAATAGAGGGAGTATTTACTTACTA
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01000053 Download
Protein sequence
Protein sequence
MPSTSMPPLPAGFRFHPTDEELIVHYLMNQAASMACPVPIIAEVNIYKCNPWDLPAKALFGEDEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPVLSTPTSENIGVKKALVFYRGKPPKGVKTDWIMHEYLLTATTGKSKQRTGSSMRLDDWVLCRIYKKSNNFQQFSSDYQEQEDGSTVEEDSVTINETSPNSEAPAGDDQFRPMTISKSCSLTDLLSTITMDYSALSQLLLDGPPEPMQSPLIYATPPCQTLNYNNNVNNHISLPQVDACSYYSANYNGMKRKRVVTDSARFLEDGGSITKKPPLQSNSRISNFGSTSSYCNQQLADQSSFQYSSLLSHPFMNQQLLLNSHPQMQ
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