gene PH01000042G1220
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000042:755601 - 756856(- stand)   Name
Alternate name Locus tag PH01000042G1220
Length of gene 1256  bp Length of CDS 768  bp
Product information
Feature type
CDS
Product name
homeobox associated leucine zipper
Alternate name
Molecular weight
(predicted)
28374.6114199999  kDa
Isoeletric point
(predicted)
5.10412216186523
Length
255  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_156025 6
Please click OG5_156025 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os04g45810.1 homeobox associated leucine zipper, putative, expressed 1E-92
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
  2. Domain
1 50 100 150 200 255
Detailed signature matches
    1. SSF46689 (Homeodoma...)
    1. PS50071 (HOMEOBOX_2)
    2. PF00046 (Homeobox)
    3. SM00389 (HOX)
    1. PF02183 (HALZ)
    1. PR00031 (HTHREPRESSR)
    1. PS00027 (HOMEOBOX_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR24326 (FAMILY N...)
GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-dependent

Molecular Function

GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0043565 sequence-specific DNA binding

Cellular Component

GO:0005634 nucleus

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 238039 52 109 7.14E-16 cd00086 homeodomain cl00084 -
superfamily 241599 52 109 7.14E-16 cl00084 homeodomain superfamily - -
non-specific 200956 52 106 3.07E-16 pfam00046 Homeobox cl00084 -
non-specific 197696 52 106 1.79E-15 smart00389 HOX cl00084 -
specific 202143 108 152 1.15E-10 pfam02183 HALZ cl02577 -
superfamily 207657 108 152 1.15E-10 cl02577 HALZ superfamily - -
non-specific 203350 79 104 0.00306189 pfam05920 Homeobox_KN cl00084 N
multi-dom 227863 52 109 8.10E-07 COG5576 COG5576 - NC
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
specific specific DNA base contacts R52,R55,I96,Q99,N100,A103 6 6 238039
specific DNA binding site R52,K53,Q54,F56,K74,K80,Q93,A95,I96,Q99,N100,R102,A103,R104,R106,S107 18 16 238039
 
DNA sequence
Upstream 1000 bp region from PH01000042G1220 gene.
CTTTTCTTTGACGTGTATTTCATCGCGAGCGTTCCGGCCAGATCATGCGCCCGATCATAAGCGACGGACTGAAGGAAATTTGTGCTACTTCAGAGGTGTGCCTCTACTACATGTTGACTGTACAGAAAAGGGTTCGTACATTGAATGAATAGGGATTCTGGATGAAATTATATTAAAAATGGAAGTTGCAGATTTCAAGGATGGTGCGCCCTACTCCTGCCGCTTAAATTTCTCGGACACCTCCTTGGGGTTTGCTTAGATCGAGGGAAGGAATTTGACGGAAATTAGAAAACAATGCAATTTCCACAAAAATCCTGTAAAATTCGCACGTTCTAAACGTGAAGAGAACCATACTTAAATAAGTATTTTTATCAGTACGAAAGCGGTGAAAATTAGTGTTTGCATAAGAAATTTGTTGCAAAAGAGGGATCATAGCCACCTTTGGCCTACACAAAAGCTCCGCCACTGGTTATTAGGACCTTATTGCATTCTTAATTTGTTAGCCGGCCGGTTTATCGACAGCATAAAAGGCGAGCAATTATAGGCTATAGTCAACTGGGAACCCATGTTCGAGAGAGTGATCAAGTGAGAAATCGATGTGCTTGTGAGTTGACTTATGGAGAGACTCAAAACTTATTGGCCGTACATGTCTTAGCTGTCGGATTTCTTGCCGAACTACCTAGATGTGAAGAAAGATATGTTTGTGCTACTCATTACTAAGACACAGGAGACTTGAGTACATGGTAAGGTTGAGAGAATGCTAGAGATGCGAGGAGAGGGAGAAGAGATAACTAGAAATAAGGCTGACCAGAAGAAAGCAAAGCTACATATAAAATTTCTCACATATTTTATTTTGTTGATTCCATTGTAATAAATTTATTATACACCAATCACAATTGAAATCTTCAAACTCGCATTAAACTATAACCATGATCAAAGTTTGGAGAATCATACAAAATCCTAAGGTTGACTCCTGCGATTAGTATATACAGACTGGATAC
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CDS sequence
ATGGACCGTGGCGGTCGCCACCAGCACCAGTTCTTCATGCCTCCGCCGGTGCCGGTGCAGCAGCAGCAGCTGTGCATGCCGATGATGGACGAGCAGTTCTTGGGCGGTGGTGGAGGCGGTGGCGCTGCGCCGGGGAGGGGCGCAGCCGGGGAGAGGAAGCAGCGGTTCACGGATGAGCAGATACGGTCGCTGGAGTCCATGTTCCATGCGCACCGCGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAACCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGATCGAGCACGACTACACCGCCCTCCGCGCCAAGTACGACGCCCTCCAGGCCCGCGTCGAGTCCCTCAGGCAAGAAAAGCTCGCCCTCACCGCACAGTTGCACGAGCTAAGCGAGAGGCTGAGGGGGCGGGAGCAGCGGGGCGGCAACGGTGTCTCCACGACGACGGCGACGGCAAGCAGCAGCAGCTGCAACGGCAGCGACGAGGGGTTCGACGACGAGGAGTTCGACGACGACAAGAGGAACGCCATCGGTTGCGTCCACATCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGGACGGCGTGCGCCACGCCGGCGGACGTCTCGGTGGAGTCCGAGTGTGACGACCAGCTCGACTATGACGGGGGCTTCCTGGAGTCCTTCTGCGCCACGCCGGAGCTCTGGGAGCCGTGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000042G1220 gene.
CCCGGCTCCCGGCCCGGGCGGCCTCTTTTATACCGGGCGCGCGGCGTTACGTGTCCACGTCCGGAGATGCGAACATGTGGTCTTTGCGATTGCGGATAAAGAAACCGCGGGCCCCACGCACCTTGACACCGAGCAAAGCCGCTTTTGTTTCCCGCCAAGTGTCCGGAATCCGGCCGCGCCAAAAGCTGTGCCCCCCGGCGCCCAATGGTTATCCGGCCGTCTCGAGATCGCCTCCGACACGTGGCGCCGCTGACGAGCACGAGTGCATAATATTCTTCTCGTCTTGCTTCCTTCCTTGTGGGTGGCCTACTACTAACTCAGTAGTAATTTCGTTTCTTTTATTTCTCTCTCCAATCTCCATCTCTTGCATAAGTCATGCAGGACCAAGAGATCAAAGAATAATTAAGGTGCATCACTGTGTCATGCGTGCATATACGCCAGCGGCCAATGGGTGGCGGAAAGGTGTGCGCCTTGTTGTGCCGGGGGGAGACGGAGACGGGCGCAACAGGAACAGGTAGACCAATGGGACGGAGCGCTAGCTCGACCGCGCTGCAGGCGTCGCCGTCACGGCGCCAAGTGTGCGGGGGCTTTCCCAGAAAGGGTCGTCGAGGTGGCGCGACGCATTTGTCCCGTTGCGCGGCGCCGCCGGGCGCACGCTAGACCGGTCGATCGATGCACTAGTGCGTCCACGAGATAGGCGCGCACCATGCGTCGCGGTGGCGAGTCTTTTCGCCTTGTGAGTTCACTTGCTTGTTTACTCCTAACGAGTAACGGCAGGGTAATTGAAGACAGATACGGTCAGATGATAAGCACTTCGATCGACTCGGATTAGTGCGGGGAGCAGAGCTTATCTCGATGGATCACATCGATCTACAAGGCCAGGAAAATTTCCCCTCCCGGAGAAAAGTGATTTGTTGTTGATCCGTACGTGTTCGAGCAGATCAGGTAAGTTCGAAGTGGTGACCCAATGCGACTTGATTACCTTTATTTGCGGAGTGCTG
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Scaffold PH01000042 Download
Protein sequence
Protein sequence
MDRGGRHQHQFFMPPPVPVQQQQLCMPMMDEQFLGGGGGGGAAPGRGAAGERKQRFTDEQIRSLESMFHAHRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYTALRAKYDALQARVESLRQEKLALTAQLHELSERLRGREQRGGNGVSTTTATASSSSCNGSDEGFDDEEFDDDKRNAIGCVHIEPPESCVLGGTACATPADVSVESECDDQLDYDGGFLESFCATPELWEPWPLVEWNAVA
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BLAST search against this genome or other genomes in database  
 

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