gene PH01000035G2440
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000035:1608913 - 1610295(- stand)   Name
Alternate name Locus tag PH01000035G2440
Length of gene 1383  bp Length of CDS 804  bp
Product information
Feature type
CDS
Product name
DUF593 domain containing protein
Alternate name
Molecular weight
(predicted)
29517.4184199999  kDa
Isoeletric point
(predicted)
4.8872947692871
Length
268  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
(0 result)
SNP ID Position Base in Scaffold Polymorphism
Ortholog Groups (determined by OrthoMCL algorithm)
(0 result)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os04g38920.1 DUF593 domain containing protein, expressed 4E-87
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 268
Detailed signature matches
    1. PF04576 (Zein-binding)
Unintegrated signatures no IPR
Unintegrated signatures
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
specific 191033 199 246 2.80E-13 pfam04576 Zein-binding cl04604 N
superfamily 191033 199 246 2.80E-13 cl04604 Zein-binding superfamily - N
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000035G2440 gene.
CAAACAGGATGGCAAATAGTAATGCATTAGTACATGTGTAGATGTTAGGGCACGCACAATGTCAATGAGGTGACATTGGTTGTATGTAACCCTTGCCGTGTAGTATTTCTAATAATGTAGATGAGAGAGAATGAGGACATCTAAGATCATCTTCAATATCGTGTTTTAGCCGGTTCAAATGAGGAGAGAGAATGCATTGAATCGATTCAATACATTGGAGGAGTCGATTCCAACAAAAAAAATGTACGGAACCGAACTCTACTTATGTGTCGATTTAAAGCATTAAACAACTTATATGAGCATTAAACAACTACATAGGAGAGAGTGTTGTTGAGAGAGGATATTATTATTTTATGGTTTGTTTAATGTAATATGGGTCCTAATTATTAGCAAGAATCGGTTCAATAGATTAGAGAAAAATAAGCTCAGTTTCTAGAATGCTTACATAGTGTGACTTCGAATCCACGTCGGTTCAATACACTAAAGATGCTCTAACATGCAATGCGGGAAATAAAGCCCTTACAGGCGGTTTCCATTGTTGTTATATGGATGTCGTCTATACTCCACGTGTTTTCTTCTTGTTGTATGGATGTCCCTTATAAACGGTTGGTCTATAGACAAATTAGAAATAAAGCATTGTAAGGATTGTCTTTAGTGCATCTGTAGATGGCATAGAAGAACCTTATAGACAGTTGCTGTCTCTACACTAGTGTACATGCTCAACTCACAAAAAAATACATTGTGAAACAAATCGTTGAGAAGTTGCAGCTTCCTGAGTGTCTACATAAGTGACAGTTTTGTTCAACCGAGTTATTAGATACCTGGCAACCCTGATTGTTGAACAGAGCATCCAGGCTTCCCCCTGGAAACATTTCTCATCAATCGGGATTCGGGGTTGCTGCCTTGCTGGCATAACCTGACGCCAATTTAAAGCAAAACACCAGGGCAGGAACTTGTACAAAATGTCGAGAATTTTCTTAATGTTAATTCCAGTATCATAT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGCCCGGCTTGGGCGTTTTCTATTTTCTCGTCGGCTCCGCGCTCGGGTTCTTGGCGATGCTCCACGCCTCCGAGTCCGAGGTCGGCGGCGAGTGGGCTTCCGCGGAGCACTGGGCTGCCCTAGCCCGCTCCGTGGGCGCCCACCACCTGTTTGTCGCAATGTCTCTCTTGCTCTTGGCCAGCAGAGTCTGGCGCCTCGGCAAGCGCTGCGACGCCGTGGAGGGGCTCGTCGGGAACGCGGACGCCGCGGTGCAAGCATTGCGCGTCGGAGGCGTCGTCTGCGCCGTGTGCGGGACGAAGATACAGGATTTGAAGAAAGGCGGCTTGGGGCCCACCATGGAGCGCGTGCGCCCGAACGGCTGCACTGACAAGCCGCTTGCGAGGCCGCTGGCCGCTGAGTTCGAGCAGGAGACCGACATGGATGAGGAAGAGGAGGAGGACAATGCGGTGGGCGAGGTGAACGGCGCGGAAGAGGGCTACGCGGATTGGGTGAGTAGGCGGCTTGCGGAGGAGAGGAGGCTGAGGGAGGCGGCGGTCGAGGAGCTGGAGAAGGAGAGGCGCGCGGCGGCGTCCGCGGCCGACGAGGCTATGGCCAAGATCGCGTGCCTGCGGAACGAGAAAGCGCTGTTGGAGCGCGAGGCGCGGCAGTTCCAGGAGATGGCGCAGCAGAAGCAGATGTACGACCGGCAGATGATCGAGTCGCTACAATGGGTGATCACGAGGTTCGGCATGCCTTGCGGGGAGGCCGAGGTCTCATCCGAGCGAGCCGTGTCGGAGACGAGCGAGGACGACAGAGACAGGAGG
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000035G2440 gene.
GAGGGACTGAAGGACATTTCTTCGGATAAGTCGTGGGCGGTCTCGCTACCTTGTGGGTCTGATGATCTTTTCTGTGGGCGCGGACTGTCGGTTTGCGGATTTCGTGATGTGTGAGGCCGACGAAAAGGAAGGGGCGTGGATAGCCGATTAGCCGTATCGGGTTGTATTAAGTTGTATACTTAACGAAAGCAATGACAGGTGGGGTACAATTTGTTTTGGACCCGCATGTCTGTGGAACAGTAAAATGTGTAAATAGGAGAATATCTTTAGAAAGAGAATACGTGGGCGTGGAGAAAGTTATGGGAAGATGATGCATTGCTGCGTGAGGTGATCTACACCGCACGGCAGGATCTGTTGTCATTTGATATTTTGTGGTCTTTCGTGACACATGCAAACTTGCGAGGCTAGGATGTCCATATGCTTGCCTTTTAGCGAGTACTACCATCTACGTGAGTGAAAGACTGTTCTCTCACTAAAAATCCTTCTATATAAAAGGAGTTTGGATTGGGGGCTTGGCTTCTCAGCCTATCCACGTCGGTTTTTTTTTGGCCGTTCAATTTTCGTCTTTTTTTTTCCGTCGTTTGATTGCCTTTAGTGTCTTGTTGGCATGTGTCGATGCACCCTGGTTCCTTCGGGACATCTCGCGTGGTTAGCTTTGCGCCTACGTCGGCCCGTGCTCACATGTGTGTGGTAGGTTTCTCGTTTCTTGTGTGCCCACTTGGCCTTTACTCCCCAGAACACCTCCTCGGTTTCTTTATCCTTCGTTGTGTCATTGCTCTTCGGTCTCCATCGCTTCCAACGCCCGGTCGTCTCTTCGTCTGGGTTGCCGCTACATGTCCTTCTTCTTGTTTCTCTCTGTGTTTTTCTCCTCCTCTGTTTCGCTCTCTTCGGGTTTCGTTTCCCTCGTTCCTTTTTTCCTCTGTTGGTTCTTGGTCGGCCTACGGTTTGTCCGGTCGTGGTTTTGTTTTGGGGAAAAAAGGGTTCTTGCCACTGTTTCTCCT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01000035 Download
Protein sequence
Protein sequence
MPGLGVFYFLVGSALGFLAMLHASESEVGGEWASAEHWAALARSVGAHHLFVAMSLLLLASRVWRLGKRCDAVEGLVGNADAAVQALRVGGVVCAVCGTKIQDLKKGGLGPTMERVRPNGCTDKPLARPLAAEFEQETDMDEEEEEDNAVGEVNGAEEGYADWVSRRLAEERRLREAAVEELEKERRAAASAADEAMAKIACLRNEKALLEREARQFQEMAQQKQMYDRQMIESLQWVITRFGMPCGEAEVSSERAVSETSEDDRDRR
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BLAST search against this genome or other genomes in database  
 

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