gene PH01000028G1600
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000028:1076268 - 1080378(+ stand)   Name
Alternate name Locus tag PH01000028G1600
Length of gene 4111  bp Length of CDS 642  bp
Product information
Feature type
CDS
Product name
AP2 domain containing protein
Alternate name
Molecular weight
(predicted)
22287.9580199999  kDa
Isoeletric point
(predicted)
4.46533584594726
Length
213  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH02SNP00001010 PH01000028:1079852 A A->G
Ortholog Groups (determined by OrthoMCL algorithm)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
OG5_177676 3
Please click OG5_177676 (Group ID from orthoMCL DB) to find more information of orthologs in other species in this ortholog group, which represented species-specific gene expansion families in most of eukaryotic species.
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
(0 result)
Gene ID Product description E-value
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
None predicted.
GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 197689 1 20 5.43E-05 smart00380 AP2 cl00033 N
superfamily 241562 1 20 5.43E-05 cl00033 AP2 superfamily - N
non-specific 237985 1 21 8.40E-05 cd00018 AP2 cl00033 N
Conserved sites/feature
Type Brief name Coordinates Complete size Mapped size Source domain
generic DNA binding site 11 0 237985
 
DNA sequence
Upstream 1000 bp region from PH01000028G1600 gene.
GGGTGCCGATTGACGAAACCTACAGAAGTGAAGGGTGTCGATTGACTTAGGTTGGTCTGGATGTCTTGATGATCAAGGTGCCGACTAACTTAGGTTGGTCTGGTATCCTCTGTGGACTTCTTGGAATCTGACAGCAATATTTTTTATTCTAATTCTATTCTAACGCGTTTGATTCTCTACTTGTGTGTTAGTCGATGGCGAGCGATGGAACGGTGGGTCAGGTTTCGGGTTGGTCGAGGAAAAGGTTCGACGACTGGCGATACATGGACAAAGGGAAGGCTTTGCGACATGCATGAGGATTTTTATTTTATTCTTTTGTAACTTAAACAAAGTTGTAATTATATTGTGTATCTGTGGTAATGCATTCTTGTAATTAATTATGAGATTATAATATTTTACTTTTACTTGTACTGAATTATTGTATGTTGATAAGATGCAATGGATTATTGTAATTTATTTGAGAATGTAACTATATTGCATTGTTACTTTTAAATTCATATTATAATTTATGAAGATGGATTATTGTATTATTTTTATAGATAAATGAAATCTTGGAATTGACTTTGAGTTATAATGATGATGGATTGTTTCTGTGGCAAAATTTTATAGTGCAAATTCTGTTGTTGAATTCTGAATGTATTATCCTATAGGAATTCGCTCGGTGATGCGTTCAAAGTCAACTGTGATTATGATGTGTTCTTATTTAGATGAAAATTTATTTACTGCAAATCAGCGATTAACGTTGGTTACATTAGTTTGAATTTTCCGGGTTCTCGCATCGCAGAAAGCGTATGCGTCCTGATCCATCGAGCTCACCTCGATCGCCTTACATTGACAAGGGCAGAATCGTAGACAATCTTAATTCGTCTGATTTCATCTCATACGTACATGCATACGTACTTCCTTTGATACTTTGCAATTGTAAGTAACATTGAACAACATATATACGTAAATGACGTATATATATATATATATATANNNNNNNNNNTATATATATATAT
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGGCATACGACCGCGAGGCCTTCAAGCTCCGCGGTGAGAACGCGCGGCTCAACTTCCCTGACCGGTTCCTCGGGAAGGGCCGCGCCGGAGGGAGCGGCCGCACTAGCGCCAGCTCCGCAGCTGCCTCGACCGCTGCCGCCGCCTCGTGCTCGTCGTCATCGTCGTCGCCTCCGCAGACTCCTGACGAGGCAAACACGCTGCAAGCGCCGCAGCAGCGGGAACAGCAGCACGTAGAAGGGTCGTTGGAAAAACAACCACAGCCTCCGCTTCCAACGTCTCAGCAAGAAGGCAGCTCTGGCGGCACGGCTGCGCCATACTCGGCTGAAATGTTTCACGCGCCGGTGCCGTCCGGTGGCCTGTGGGCTCCTGCAGACGAGGCATGGTTCAGCGCGTGGGGCCCCGACAGCTCCTTTTGGGACTACGACATGGACAGCGCCCGTGGCTTCTTCCTCCAGTCTCGCTTCTCCGGTGATGAGGCCGGCATGGAGCATTCCAACGCACAAGAATCCGCACCAACAACGGCAGCAGCAGAAGCAGGAGGGACGTCGGATACACCATGCGATGACGCCCCCGTAACATCTTCTTCTTCAGCTCCTCCTCCCCAGACGACTCAGACTCCCACCTTCATGTGGAAGGACTAA
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BLAST search against this genome or other genomes in database  
Downstream 1000 bp region from PH01000028G1600 gene.
ATAAAAGGACCAAGACAATGGAAGAGGGATGCTATGCTATCGACCTCATTTCTTCACTCCGAAAGCCAAATCAACTCTTGGATCATTGCCAGTTTTTCCCTTTTCTGAATCACCCATCATTCGTCGACAAATCCACAGTCCGCAATTCCACATCGGCCTTGCCTCCACCTTAACGACTGCCACTCATTGCTTAGTAGTCAACAGCAAAGGGCCTAATGATGCGTGCATAGTACTGGCAATTTCGTAATAAGAAGTATTAAACAAGCACATAATCAGCTAAAAGCGGTTAACTGGGACGACCAGCTGAGAAGGCCCTTGTGGAACCCGTAGGGCAGTAGCGCATTTTTTTTGTTTTTTTTCAGGCATAACAGTAGGAAAGCATCCTACTCTCTCTCTCTCTGTGTATGTATATATAAACAAAAACAGAAGTTACAAATTACAAGTTGTAAGGCCCAAGAAAGGCAAAGAAAACCCTCTCTAGCTAAGGCTGCTTAGCCAAGAGGTGAAGAGGGGCTTGTGCTTTGAATCTGCCCTATGAATAACAAGAGTGAATTCATGAAGAAAGGTGCTCCGCTAGCCATCAAAGCTCGGGTCGAGGTGATTAAAAATGAGATTGTTTCTTACTATCCAAATCGCCCATGAGGCTAGAATGATGACTTTCATGAAGAAGTTCTTATTAAGTTTGTTCTTGAGACGAAGGATCGCTTGGTGAGTTGATTCTAGGGACGAGCGCTGAGGGCAGACGAAATTCCAACAGTTTTGAACAAAAGGATAGGCCCAGAAAAGATACTGAATGGTTTCCTCTGCTCCTTGATCACACAAGACACATGAATAGTCCTCCAGCTGGCAGGTCTTTCTTCGCAAAAGGTTTCTCGAATTGAGTCTATCCCTTAGCAGAAGCCAGAAAAAAAACCTTGTGGCGACTTTGGCAGACGCTTGCCCATAACCATCTGTAAAAGGGCGGGACAGTAGAGGCACCCATGAGCTGTTTATAAACCTTT
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BLAST search against this genome or other genomes in database  
Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
Scaffold PH01000028 Download
Protein sequence
Protein sequence
MAYDREAFKLRGENARLNFPDRFLGKGRAGGSGRTSASSAAASTAAAASCSSSSSSPPQTPDEANTLQAPQQREQQHVEGSLEKQPQPPLPTSQQEGSSGGTAAPYSAEMFHAPVPSGGLWAPADEAWFSAWGPDSSFWDYDMDSARGFFLQSRFSGDEAGMEHSNAQESAPTTAAAEAGGTSDTPCDDAPVTSSSSAPPPQTTQTPTFMWKD
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BLAST search against this genome or other genomes in database  
 

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