gene PH01000002G1660
Feature Overview
Species moso bamboo (Phyllostachys edulis) Feature type gene
Genomic location PH01000002:1200472 - 1205728(+ stand)   Name
Alternate name Locus tag PH01000002G1660
Length of gene 5257  bp Length of CDS 1278  bp
Product information
Feature type
CDS
Product name
OsSPL2 - SBP-box gene family member
Alternate name
Molecular weight
(predicted)
46156.9884200001  kDa
Isoeletric point
(predicted)
8.45004653930664
Length
425  aa
Expression profiles
Expression status (Yes/No)
Yes
Heterozygous SNPs
As a diploid organism, heterozygous SNPs indicate different nucleotides at two bi-allelic loci on the same chromosome.
SNP ID Position Base in Scaffold Polymorphism
PH01SNP00034500 PH01000002:1202158 A A_G
PH01SNP00034510 PH01000002:1202230 G G_C
Ortholog Groups (determined by OrthoMCL algorithm)
(0 result)
Group ID from orthomcl DB Counts Members of moso bamboo in this ortholog group
Comparative genomics
Best arabidopsis hit
(using TAIR10)
(0 result)
Gene ID Short description Curator summary Computational description E-value
Best rice hit
(using MSU7)
Gene ID Product description E-value
LOC_Os01g69830.1 OsSPL2 - SBP-box gene family member, expressed 3E-104
 
Function (determined by interpro in EMBL-EBI)
Protein family membership

None predicted.

Domains and repeats
  1. Domain
1 50 100 150 200 250 300 350 400 425
Detailed signature matches
    1. SSF103612 (SBT domain)
    2. PS51141 (ZF_SBP)
    3. PF03110 (SBP)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PTHR31251 (FAMILY N...)
  2. PTHR31251:SF0 (SUBF...)
GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003677 DNA binding

Cellular Component

GO:0005634 nucleus

You may use PPI function to find protein-protein interactions network about moso bamboo.
Pathways (All the pathways are obtained from KEGG)
(0 result)
KEGG orthology Functional Subsystem Pathway
You may use Pathway function to find more information for detail.
Reactions (All the pathways are obtained from KEGG)
(0 result)
ID for KEGG orthology Reaction description EC number
Structure features (determined by CDD in NCBI)
Conserved domain models
Type PSSM-ID Start Stop E value Accession Short name Superfamily Incomplete ?
non-specific 190527 61 199 2.05E-26 pfam03110 SBP cl03894 -
superfamily 190527 61 199 2.05E-26 cl03894 SBP superfamily - -
Conserved sites/feature
(0 result)
Type Brief name Coordinates Complete size Mapped size Source domain
 
DNA sequence
Upstream 1000 bp region from PH01000002G1660 gene.
TGGCTAGCCTACACTGCCAGTAGCGCAGTACAACTGCGTGCATCTGTTTCGCCCGCTAGAGCTGCAATCTGGCGAGCTCAAATGTCGAACCAGCTTTTGGTCGACTCGGCCGGAATTCATCGTGATCGTAACAGTTGTAAAAGGCATACAGCTTTATTTTTATCGTGAGCATTAGAGTTATGTAACAAATTAAAGTATATTGTCACATGGCTGCACGAAAAATTCGAATAATTATAAACAAGAGGATGAAATATTTACGCCTTGACCAGTAATTTCAAAAGGGTGCGTCGTTTCCTAGAAAAAAAATTAAAAAATACCGCATTTCAAATGAGCGCTAAGATGAAATGTTGACGTTAATTACTCAAATTTGTCTCGTGTCTCCAGATCTCCTTCGACCGAAGCTTTTGACCCGCGGCGGGGTTCCCTAATTTCAAGACTTTTCTTACCGCCCTACCAGGCTACCCTTGGCAACAAGATGGCAGTACAAAATCTAGGTGTTGGTAAAGTAAAGATATGACTCTTTTTTACTGAAGTAAATATATGACCAGTGACCACTGGTCAATGTGTGAAAACAATGAATTGGAACTTGGACCTCACATAGCTGCATCGGCAGTGGTGATAAATAATCTCATTAGGAGAATAACTATGCACAAAGAAAGGCAAAAATACCTTTGCTAGAGGGACCACATTATGAGCACACAGCACAATGATATAGAAGAAAAAAAACCTGCAGTTCTACGCCACTCTAGAATATTACTTTCGATATATTTATTACAAAAAGAGTTGCAGCACAACTATGAATAAGTTAATAGTTTGTTTTAGTTCCATGAAACCTCATTTGCTAGTTGTATGTATTTTAGTCCCAGAACCCATACTTTTATCATTAAAAAGCTAAAATACCAATATATTATTTCTGAGCGAATCTCCTGATACTATCATACTACGATCCGTTGCATTGTTTTCCACACCCATCACTATTCTCAATAATTCTCCTGTCTATT
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Need more than 1000 bp? Try sequence retrieval tool or view intergenic regions in GBrowse.
CDS sequence
ATGCCTTCTTGGGACCTCGGCACGGTGGTCGGCCCGAGCGGCGTCGGCGGCGGTGGCGCGCTCGACCTCAAGCTCGGCGCCCCCACGAGCTGGAAGGCGGCGGCCGTGGCTCCGGTGCCGCCGTCGCCCGGGACGGCGAAGCGGCCGCGAGCGGGGCAGGGGCAGCAGGCGGTGCCGGCGTGCTCGGTGGAGGGGTGCACGGCCGACCTGTCCAAGTGCCGGGAGTACCACCGCCGGCACAAGGTCTGCGAGGCGCACTCCAAGACGCCCTTCGTCACCGTCGCCGGCCAGCAGCAGCGCTTCTGCCAACAGTGCAGCAGTGATCTATGGCATGAGGTTGAAGCAATGTGGAAATTTGACCATATAGGTCATCAACAAGGCATTTTACAACTTTTGGTCGATTTGCACCAGCTTTCTCGCAATGGTGAAATCAGATTCAGGCTTTGTATCCATGGTGACTTGACTTGGGAAATCCTTATGATTGGTAGAACTCTTCTTTGTAGGTTTCATTTGCTTGGAGAGTTTGACGAGGTGAAGAGGAGCTGCAGGAAGCGACTTGATGGACACAACAGGCGCCGCCGGAAGCCCCAGCCAGATCCTCTGAATCCTGGCGGATTGTTTGCTAATCACCACGGAGCAACAAGATTTGCATCGTACCCACAAATCTTCTCCACAACATCCATGGCGGAGCCCAAGTGGCCGGCCAGCGCCGTGAAGACGGAGAGCACCGCGTTCCACGAGCCGTACTACCCGGCCCTCCACCTCAACGGCGCCGCCTCCCTCTTCCACGGCAAGGAGAGGAAGCACTTCCCGTTCCTGACGGACCACGGTGACGCGGCGGCCACGGTCTTTAGCTGCCAACCGTTCACCATCACCCCTTCCTCAGAGAGCAGCAGCAACAGCAGCAGGCACAGCAACGGAAAGATGTTCGCCCACGACGGGGGTCTAGACAACTGTGCTCTCTCTCTTCTGTCAGACAGCCCGACACCGGCGCAGATCATGATCCCCGCGGCGCAGCCTCTCGGCGGTGCAGGGATACAGTACGGCAGCGTGGCGCGGCTGCCCAACGACAGCGATGTCTCGCTCACCCGGCTGTCTTATGTAAGGGTGGAAGACAAAAACACGTCCATTTTGGCCACATCTACTAGCCACACTGCTACCGCTACTGCTACCAGTGCCGCTGCAACACAGCTACAATACCATGGCTACTACCATGTAAATGCTGATCAGGGCAACTCAGATGATGCCATACAGGCCCTTCCCTTCTCATCCTGGTAG
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Downstream 1000 bp region from PH01000002G1660 gene.
ATAAAAGATTATAAAATGCGTTGGAAGAGGAAAAACGTTGGGAATTGCTGTGCATTTGTGTTAAGAGGTGTAGTTCCAGCATCCATGCTATGTGCTGTGTCATGTATCTATTGAAGATAAGACAGATTGGAAGCTACAAAATTCCTCCAAAGTCCAATTTCAGTGCATTTTGGCATATCTCAAGAGCGACTGATGACTCGATCGAGGAGGATTATACCATCAAATAATCCCTTAAAAGAATGTCAAGTAATTTTTTTACCATCTAGGAAGTTTTTAGTGTCAGGTTCATTTTGTTAACATGCAATCGCACTATGTCTTGGTGACAATTAATTTTCACCAAAATCCTATTCTTGTACCTAAATAAAAGTCCTACTACTATACTTTTTGGAGAGCATACAAGCACTACTCGTAATATTTTCGTAAATCTGCTACTAATTTAGTAATTTATAATCTTCATAGGTGAAACCCTCTGGTACCATTTAGGAAGAAAACTTTGTAATTTTATTCATGTTTCATCAGGGGATAAATCCACTTGGTAGAGTTTGATTTCAACCATTTGTTTCGAATCGACTGTTTGGAAGTTGTGTAGGGATTTTGTTACAGAAAATTCTTCAAGAAAAAAATATGGTAGAGACATGTGAATTGTACGATCTCCCTATTCAGCCTCGTTTCCCATTGTTTGTACATCTTCCATATTACCTTGCAAGTTACAACAAGGTGCTTCCTATTTGTGTTAGCTGATGCTCAATTCTCCTTAAATGTGTGCTATGTACTCTTTCATTCATGCTTATCCTGGTGATCTTAGGCATAGAGCTCTTTTACGGTTCATTCTTTTGATACAATAATTTAGATTAGTTTGGATTTAGTTATATCACACCTGGTAGTATGAGTAGTAGAATTCTGAGAAGGTAGAATTACAATTGCCTATGTGGGGATCACATGGCACAAGAGTAATATTTTCAACCCTAGTTGGAAAAGTCCATAATACCCTCACGAAAAAA
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Scaffold PH01000002 Download
Protein sequence
Protein sequence
MPSWDLGTVVGPSGVGGGGALDLKLGAPTSWKAAAVAPVPPSPGTAKRPRAGQGQQAVPACSVEGCTADLSKCREYHRRHKVCEAHSKTPFVTVAGQQQRFCQQCSSDLWHEVEAMWKFDHIGHQQGILQLLVDLHQLSRNGEIRFRLCIHGDLTWEILMIGRTLLCRFHLLGEFDEVKRSCRKRLDGHNRRRRKPQPDPLNPGGLFANHHGATRFASYPQIFSTTSMAEPKWPASAVKTESTAFHEPYYPALHLNGAASLFHGKERKHFPFLTDHGDAAATVFSCQPFTITPSSESSSNSSRHSNGKMFAHDGGLDNCALSLLSDSPTPAQIMIPAAQPLGGAGIQYGSVARLPNDSDVSLTRLSYVRVEDKNTSILATSTSHTATATATSAAATQLQYHGYYHVNADQGNSDDAIQALPFSSW
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